Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CYCSP42-201ENST00000450823 238 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC002553.2-201ENST00000453217 340 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RPS4XP12-201ENST00000461747 709 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RN7SL385P-201ENST00000468873 276 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC108729.2-201ENST00000476543 840 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 ENPP7P11-201ENST00000505915 627 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC112206.4-201ENST00000515142 405 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RNU6-1102P-201ENST00000516149 96 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RN7SKP92-201ENST00000517266 244 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC109635.6-201ENST00000525487 1113 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 MIR4284-201ENST00000578924 81 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RPL26P30-202ENST00000602923 645 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC007497.1-201ENST00000610421 561 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 FAM27B-201ENST00000610601 213 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AL163051.2-201ENST00000618976 735 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 MIR6758-201ENST00000620653 63 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC021106.3-201ENST00000623925 531 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 AC107068.1-201ENST00000563286 4218 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 NCLP2-201ENST00000416078 1462 ntBASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CCDC3Q9BQI4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC010300.1-201ENST00000600671 5134 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 STX3-208ENST00000641815 3236 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AL590240.1-201ENST00000334118 313 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 SETP15-201ENST00000412724 337 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 RSU1P3-201ENST00000412878 835 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 CNOT7P1-201ENST00000429006 852 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 BTG4P1-201ENST00000510421 183 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 RFPL4AP5-201ENST00000514977 504 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 RNA5SP392-201ENST00000516905 112 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC034205.1-201ENST00000520621 638 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC093014.1-201ENST00000548926 724 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC023158.1-201ENST00000561632 1025 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 RN7SL690P-201ENST00000582087 240 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC120053.1-201ENST00000607706 736 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC092953.2-201ENST00000608000 699 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 AC026951.1-201ENST00000559530 2459 ntBASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC3Q9BQI4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
CCDC3Q9BQI4 AC011447.7-201ENST00000624228 1590 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 MAPK10-328ENST00000641553 4009 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms