Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 NPM1P35-201ENST00000533043 868 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC074029.2-201ENST00000551045 634 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC063949.1-201ENST00000552900 865 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC245128.3-201ENST00000594721 748 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC073137.1-201ENST00000605636 634 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AL161616.1-201ENST00000611867 286 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 RPL23AP61-201ENST00000623642 466 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC119674.1-220ENST00000641502 1048 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 SPATA2P1-201ENST00000431223 2055 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS35Q96QK1 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC018529.3-201ENST00000624212 2254 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 AC053481.2-202ENST00000582394 1500 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 SALL4P2-201ENST00000423288 2910 ntBASIC4.66□□□□□ -1.66
VPS35Q96QK1 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.66□□□□□ -1.66
VPS35Q96QK1 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
VPS35Q96QK1 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
VPS35Q96QK1 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS35Q96QK1 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
VPS35Q96QK1 AC010928.1-201ENST00000592477 1447 ntBASIC4.65□□□□□ -1.66
VPS35Q96QK1 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.65□□□□□ -1.66
VPS35Q96QK1 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS35Q96QK1 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
VPS35Q96QK1 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
VPS35Q96QK1 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AL590240.1-201ENST00000334118 313 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 GSTA12P-201ENST00000402398 508 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 RNU2-50P-201ENST00000410494 143 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AL512504.1-201ENST00000415494 778 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AL590139.1-201ENST00000416267 400 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 ATG4AP1-201ENST00000416893 538 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC108463.1-201ENST00000450258 347 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC021205.1-201ENST00000468797 348 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC096741.1-201ENST00000472250 846 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 RPL23AP37-201ENST00000479658 549 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 RPL36AP41-201ENST00000493820 306 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC034244.2-201ENST00000514668 858 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC096553.1-201ENST00000605169 829 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC073111.2-201ENST00000605657 1075 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 MIR8069-1-201ENST00000616627 86 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 MIR8069-2-201ENST00000621412 86 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AC015804.1-201ENST00000622935 435 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 AP003499.2-201ENST00000624100 483 ntBASIC4.65□□□□□ -1.67
VPS35Q96QK1 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS35Q96QK1 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS35Q96QK1 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS35Q96QK1 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS35Q96QK1 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.65□□□□□ -1.67
VPS35Q96QK1 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
VPS35Q96QK1 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS35Q96QK1 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS35Q96QK1 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
VPS35Q96QK1 RNA5SP28-201ENST00000363841 119 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 MIR421-201ENST00000365696 85 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 AMZ2P2-201ENST00000406819 1057 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 OR6K4P-201ENST00000423179 955 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 MTCO1P57-201ENST00000432182 261 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 MTND6P18-201ENST00000439477 513 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC243772.1-201ENST00000451620 410 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC010326.1-201ENST00000462726 602 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
VPS35Q96QK1 HMGB3P13-201ENST00000511263 607 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 ACTR6P1-201ENST00000514311 1104 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 MTCYBP19-201ENST00000517463 1124 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.64□□□□□ -1.67
VPS35Q96QK1 OR5M2P-201ENST00000529003 936 ntBASIC4.64□□□□□ -1.67
VPS35Q96QK1 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms