Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 IGKV7-3-201ENST00000357453 298 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SNORD16-201ENST00000362803 99 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RNA5SP350-201ENST00000363298 111 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 Y_RNA.460-201ENST00000384255 102 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RNU6-780P-201ENST00000391030 104 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MIR1302-11-201ENST00000408051 138 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MIR1302-9-201ENST00000408365 138 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MIR1302-10-201ENST00000408734 138 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RPS3AP9-201ENST00000417027 792 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RPL21P50-201ENST00000417698 477 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL035410.1-201ENST00000427409 427 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC008850.1-201ENST00000427546 362 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 GAPDHP19-201ENST00000431768 1005 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 COX4I1P2-201ENST00000447446 547 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MTND1P18-201ENST00000448191 573 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC092967.1-201ENST00000449016 481 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RNU7-27P-201ENST00000459281 62 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RN7SL393P-201ENST00000463588 296 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 HMGN1P10-201ENST00000474557 553 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SNRPCP11-201ENST00000492453 205 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC114981.1-201ENST00000503897 678 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 Y_RNA.701-201ENST00000516812 110 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 HMGB1P23-201ENST00000518743 568 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 COX6B1P4-201ENST00000519826 484 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ARL2BPP5-201ENST00000523141 481 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC023968.1-201ENST00000560719 475 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC141257.3-201ENST00000572906 215 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MIR4301-201ENST00000577203 66 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC233702.7-202ENST00000582941 211 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC063977.7-201ENST00000594454 337 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 LAPTM4BP2-201ENST00000604542 446 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MIR1302-2-201ENST00000607096 138 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 RNU6-84P-201ENST00000607737 102 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC018690.1-201ENST00000608144 626 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MIR7973-1-201ENST00000614683 76 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 USP12-203ENST00000620323 349 ntTSL 3 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC089999.3-201ENST00000622440 577 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC068880.5-201ENST00000624331 290 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PISRT1-201ENST00000626175 531 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 TEX41-254ENST00000626394 423 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SNX18P3-202ENST00000565670 1750 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ASNSP1-204ENST00000641977 1664 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SMG1P5-202ENST00000529428 4219 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 SMG1P2-201ENST00000566127 4221 ntBASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
UBE3DQ7Z6J8 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 AC011504.1-201ENST00000623331 4103 ntBASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 OR7A17-202ENST00000641113 3639 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 DAOA-AS1-201ENST00000448407 2482 ntTSL 2 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 BIN2P1-201ENST00000504996 1530 ntBASIC6.06□□□□□ -1.44
UBE3DQ7Z6J8 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms