Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC3.01□□□□□ -1.93
PRKDCP78527 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
PRKDCP78527 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
PRKDCP78527 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
PRKDCP78527 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC3.01□□□□□ -1.93
PRKDCP78527 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
PRKDCP78527 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 PEX12P1-201ENST00000400284 1048 ntBASIC3□□□□□ -1.93
PRKDCP78527 AJ239321.1-201ENST00000424255 564 ntBASIC3□□□□□ -1.93
PRKDCP78527 HSPD1P21-201ENST00000436541 245 ntBASIC3□□□□□ -1.93
PRKDCP78527 RHEBP2-201ENST00000450289 600 ntBASIC3□□□□□ -1.93
PRKDCP78527 RPS3AP14-201ENST00000483907 780 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3□□□□□ -1.93
PRKDCP78527 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 AC110743.1-201ENST00000584870 478 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC3□□□□□ -1.93
PRKDCP78527 AC119674.1-212ENST00000641155 993 ntBASIC3□□□□□ -1.93
PRKDCP78527 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 UG0898H09-202ENST00000623646 7040 ntBASIC3□□□□□ -1.93
PRKDCP78527 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 RNU1-63P-201ENST00000383902 164 ntBASIC3□□□□□ -1.93
PRKDCP78527 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 RN7SL271P-201ENST00000487601 295 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 MTND1P6-201ENST00000523621 946 ntBASIC3□□□□□ -1.93
PRKDCP78527 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 MIR4433B-201ENST00000581329 102 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC135507.2-201ENST00000612443 309 ntBASIC3□□□□□ -1.93
PRKDCP78527 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC3□□□□□ -1.93
PRKDCP78527 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 AC093297.3-201ENST00000607056 2517 ntBASIC3□□□□□ -1.93
PRKDCP78527 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 APOOP2-201ENST00000461561 539 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC106707.2-201ENST00000484182 374 ntBASIC3□□□□□ -1.93
PRKDCP78527 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 RPL5P23-201ENST00000496040 868 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC007458.1-201ENST00000542812 373 ntBASIC3□□□□□ -1.93
PRKDCP78527 MIR8058-201ENST00000615737 89 ntBASIC3□□□□□ -1.93
PRKDCP78527 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 DHX9P1-201ENST00000436565 3076 ntBASIC3□□□□□ -1.93
PRKDCP78527 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 MIR1251-201ENST00000408552 70 ntBASIC3□□□□□ -1.93
PRKDCP78527 RPL7P44-201ENST00000424827 742 ntBASIC3□□□□□ -1.93
PRKDCP78527 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 AC023271.1-201ENST00000445936 1090 ntBASIC3□□□□□ -1.93
PRKDCP78527 RPL23AP81-201ENST00000455252 467 ntBASIC3□□□□□ -1.93
PRKDCP78527 RPL7P23-201ENST00000493874 747 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3□□□□□ -1.93
PRKDCP78527 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC3□□□□□ -1.93
PRKDCP78527 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC3□□□□□ -1.93
PRKDCP78527 RNU1-30P-201ENST00000606575 163 ntBASIC3□□□□□ -1.93
PRKDCP78527 MIR7112-201ENST00000616126 65 ntBASIC3□□□□□ -1.93
PRKDCP78527 AC243312.2-201ENST00000623340 601 ntBASIC3□□□□□ -1.93
PRKDCP78527 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3□□□□□ -1.93
PRKDCP78527 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC2.99□□□□□ -1.93
PRKDCP78527 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 FREM1-204ENST00000422223 10086 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC2.99□□□□□ -1.93
PRKDCP78527 AL160175.1-201ENST00000428124 247 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC2.99□□□□□ -1.93
PRKDCP78527 RPL7L1P13-201ENST00000511702 739 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.99□□□□□ -1.93
PRKDCP78527 AC006504.3-201ENST00000586818 523 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 AC116667.1-201ENST00000604855 2072 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 ARHGAP42P3-201ENST00000443989 2508 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms