Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RFPL4AP5-201ENST00000514977 504 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 RN7SKP147-201ENST00000517154 244 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 HIGD1AP18-201ENST00000520730 278 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.18□□□□□ -1.58
PTPN9P43378 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTPN9P43378 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC5.18□□□□□ -1.58
PTPN9P43378 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC5.18□□□□□ -1.58
PTPN9P43378 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.18□□□□□ -1.58
PTPN9P43378 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC5.18□□□□□ -1.58
PTPN9P43378 BNIP3P38-201ENST00000601117 544 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 RPP40P2-201ENST00000603596 712 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 AL451049.1-201ENST00000608672 497 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 CYCSP41-201ENST00000616920 296 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 AL356274.1-201ENST00000617064 410 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC5.18□□□□□ -1.58
PTPN9P43378 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
PTPN9P43378 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
PTPN9P43378 AC109780.1-201ENST00000451768 1344 ntBASIC5.18□□□□□ -1.58
PTPN9P43378 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
PTPN9P43378 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTPN9P43378 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.18□□□□□ -1.58
PTPN9P43378 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
PTPN9P43378 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 AC017007.4-201ENST00000503353 1352 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.17□□□□□ -1.58
PTPN9P43378 MTCO1P18-201ENST00000455518 1419 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 RNU4-44P-201ENST00000363050 141 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 RNU6-666P-201ENST00000363499 107 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 RNA5SP507-201ENST00000363603 121 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 ZNF602P-201ENST00000405929 924 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.17□□□□□ -1.58
PTPN9P43378 RN7SKP97-201ENST00000410966 333 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 DPPA2P3-201ENST00000411853 655 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 RPL23AP27-201ENST00000415161 451 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AF186996.5-201ENST00000418098 904 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AC023128.2-201ENST00000420880 1223 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AC092647.3-201ENST00000443044 633 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 Z95152.1-201ENST00000453556 656 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.17□□□□□ -1.58
PTPN9P43378 AP000942.1-201ENST00000463969 747 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 ENPP7P9-201ENST00000514456 627 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.17□□□□□ -1.58
PTPN9P43378 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
PTPN9P43378 AP006245.2-201ENST00000522004 300 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC5.17□□□□□ -1.58
PTPN9P43378 HMGN2P6-201ENST00000551091 273 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.17□□□□□ -1.58
PTPN9P43378 MIR4509-3-201ENST00000578671 94 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 MIR4509-2-201ENST00000583920 94 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.17□□□□□ -1.58
PTPN9P43378 AP002906.1-201ENST00000603405 233 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AC016769.4-201ENST00000616893 535 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 MIR4509-1-201ENST00000618224 94 ntBASIC5.17□□□□□ -1.58
PTPN9P43378 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC5.17□□□□□ -1.58
PTPN9P43378 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
PTPN9P43378 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.17□□□□□ -1.58
PTPN9P43378 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
PTPN9P43378 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
PTPN9P43378 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
PTPN9P43378 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.16□□□□□ -1.58
PTPN9P43378 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTPN9P43378 RNU4-4P-201ENST00000364588 130 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTPN9P43378 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
PTPN9P43378 AL021331.1-201ENST00000402817 582 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AP002530.1-201ENST00000405705 684 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AL034374.1-201ENST00000406329 351 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AP000357.1-201ENST00000409926 1165 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 CTSL3P-202ENST00000412179 788 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 LIPT1P1-201ENST00000415870 1186 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AC093162.1-201ENST00000419682 124 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.16□□□□□ -1.58
PTPN9P43378 MTCO2P23-201ENST00000425216 680 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 USP12PY-201ENST00000427677 1064 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTPN9P43378 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.16□□□□□ -1.58
PTPN9P43378 MED6P1-201ENST00000439659 713 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.16□□□□□ -1.58
PTPN9P43378 GTF3AP5-201ENST00000442645 697 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
PTPN9P43378 MYO5BP2-201ENST00000449815 1277 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AL591623.2-201ENST00000449978 222 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AL096803.2-201ENST00000450032 677 ntBASIC5.16□□□□□ -1.58
PTPN9P43378 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms