Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.49□□□□□ -1.69
SOX3P41225 AL671862.1-201ENST00000515851 349 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.49□□□□□ -1.69
SOX3P41225 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 MTND5P21-201ENST00000531961 522 ntBASIC4.49□□□□□ -1.69
SOX3P41225 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.49□□□□□ -1.69
SOX3P41225 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 AC087888.1-201ENST00000550884 1254 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.49□□□□□ -1.69
SOX3P41225 AL049839.1-201ENST00000556151 657 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AL390334.1-201ENST00000556395 450 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AC025918.2-201ENST00000558683 763 ntBASIC4.49□□□□□ -1.69
SOX3P41225 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 IMMP1LP1-201ENST00000605170 488 ntBASIC4.49□□□□□ -1.69
SOX3P41225 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 AL022401.1-201ENST00000619498 108 ntBASIC4.49□□□□□ -1.69
SOX3P41225 MAPK10-263ENST00000641052 4307 ntBASIC4.49□□□□□ -1.69
SOX3P41225 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
SOX3P41225 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SOX3P41225 AC008758.3-201ENST00000507003 1829 ntBASIC4.49□□□□□ -1.69
SOX3P41225 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.48□□□□□ -1.69
SOX3P41225 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 ZNF90P1-201ENST00000480493 1951 ntBASIC4.48□□□□□ -1.69
SOX3P41225 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 MIR137-201ENST00000385223 102 ntBASIC4.48□□□□□ -1.69
SOX3P41225 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.48□□□□□ -1.69
SOX3P41225 RNA5SP345-201ENST00000410646 108 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.48□□□□□ -1.69
SOX3P41225 E2F6P2-201ENST00000420708 748 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 PIH1D2-202ENST00000431456 1245 ntTSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 HMGB3P10-201ENST00000434734 572 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC4.48□□□□□ -1.69
SOX3P41225 ARAFP2-201ENST00000440565 559 ntBASIC4.48□□□□□ -1.69
SOX3P41225 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.48□□□□□ -1.69
SOX3P41225 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.48□□□□□ -1.69
SOX3P41225 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.48□□□□□ -1.69
SOX3P41225 AP003102.1-201ENST00000525638 661 ntBASIC4.48□□□□□ -1.69
SOX3P41225 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SOX3P41225 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 AP001880.2-201ENST00000538233 448 ntBASIC4.48□□□□□ -1.69
SOX3P41225 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.48□□□□□ -1.69
SOX3P41225 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.48□□□□□ -1.69
SOX3P41225 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.48□□□□□ -1.69
SOX3P41225 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 AC023158.1-201ENST00000561632 1025 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AC091042.1-201ENST00000579213 173 ntBASIC4.48□□□□□ -1.69
SOX3P41225 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 AL512782.1-201ENST00000603093 364 ntBASIC4.48□□□□□ -1.69
SOX3P41225 ABI1P1-201ENST00000603375 1120 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AC010424.2-201ENST00000607594 443 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AP001033.2-201ENST00000609701 1003 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AC004241.3-201ENST00000611728 517 ntBASIC4.48□□□□□ -1.69
SOX3P41225 CR381572.2-201ENST00000624852 397 ntBASIC4.48□□□□□ -1.69
SOX3P41225 FRG1DP-201ENST00000635586 771 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SOX3P41225 SOCS5P3-201ENST00000425115 1576 ntBASIC4.48□□□□□ -1.69
SOX3P41225 AC021242.1-201ENST00000507315 2035 ntBASIC4.48□□□□□ -1.69
SOX3P41225 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.48□□□□□ -1.69
SOX3P41225 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SOX3P41225 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.48□□□□□ -1.69
SOX3P41225 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SOX3P41225 MTCO1P4-201ENST00000520516 1409 ntBASIC4.47□□□□□ -1.69
SOX3P41225 AP001273.1-201ENST00000624493 3152 ntBASIC4.47□□□□□ -1.69
SOX3P41225 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.47□□□□□ -1.69
SOX3P41225 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SOX3P41225 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
SOX3P41225 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.47□□□□□ -1.69
SOX3P41225 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.47□□□□□ -1.69
SOX3P41225 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SOX3P41225 AC008549.2-201ENST00000333482 706 ntBASIC4.47□□□□□ -1.69
SOX3P41225 SNORD96B-201ENST00000386148 79 ntBASIC4.47□□□□□ -1.69
SOX3P41225 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SOX3P41225 ATP5F1P6-201ENST00000402768 767 ntBASIC4.47□□□□□ -1.69
SOX3P41225 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.47□□□□□ -1.69
SOX3P41225 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.47□□□□□ -1.69
SOX3P41225 AC114755.2-201ENST00000413520 361 ntBASIC4.47□□□□□ -1.69
SOX3P41225 AC092570.3-201ENST00000420113 693 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms