Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC093824.1-201ENST00000508796 343 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA9P31269 MIR2116-201ENST00000517221 80 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA9P31269 MRPL49P2-201ENST00000521066 465 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 AP003730.1-201ENST00000524605 285 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 CYCSP40-201ENST00000575927 294 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 AC233702.9-201ENST00000581528 203 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA9P31269 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC4.75□□□□□ -1.65
HOXA9P31269 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA9P31269 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.75□□□□□ -1.65
HOXA9P31269 AL023881.1-201ENST00000621088 301 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
HOXA9P31269 AC090017.1-201ENST00000548612 1779 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.75□□□□□ -1.65
HOXA9P31269 AL391684.1-202ENST00000641293 1636 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.75□□□□□ -1.65
HOXA9P31269 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.75□□□□□ -1.65
HOXA9P31269 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HOXA9P31269 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
HOXA9P31269 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 LINC00622-201ENST00000562811 1570 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.74□□□□□ -1.65
HOXA9P31269 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA9P31269 EIF2AP4-201ENST00000424793 1781 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 ATP5F1P2-201ENST00000398143 760 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 RPL7P19-201ENST00000469948 618 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 MTCO1P35-201ENST00000515270 228 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 AC134698.5-201ENST00000519444 336 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.74□□□□□ -1.65
HOXA9P31269 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA9P31269 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.74□□□□□ -1.65
HOXA9P31269 MIR3653-201ENST00000625572 110 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 AC107021.2-201ENST00000567714 2095 ntBASIC4.74□□□□□ -1.65
HOXA9P31269 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA9P31269 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.74□□□□□ -1.65
HOXA9P31269 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HOXA9P31269 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXA9P31269 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXA9P31269 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXA9P31269 MAPK10-286ENST00000641208 8747 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXA9P31269 RNA5SP28-201ENST00000363841 119 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 RNU1-130P-201ENST00000363930 160 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 RPL23AP26-201ENST00000412728 464 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.73□□□□□ -1.65
HOXA9P31269 CKS1BP6-201ENST00000424932 240 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 RPS12P10-201ENST00000427031 377 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 MTND6P18-201ENST00000439477 513 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.73□□□□□ -1.65
HOXA9P31269 RPL23AP43-201ENST00000446445 471 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AC114755.5-201ENST00000447760 831 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 DHFRP3-201ENST00000455595 559 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 RPS27AP16-201ENST00000492222 470 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXA9P31269 CYCSP29-201ENST00000533731 318 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXA9P31269 AC084824.1-201ENST00000550917 1005 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AC025884.1-201ENST00000556034 378 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AC087477.6-201ENST00000559595 843 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 AC093227.2-201ENST00000589357 285 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 AC067959.1-201ENST00000604334 379 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXA9P31269 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.73□□□□□ -1.65
HOXA9P31269 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA9P31269 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.73□□□□□ -1.65
HOXA9P31269 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HOXA9P31269 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HOXA9P31269 AL450326.2-201ENST00000421913 1962 ntBASIC4.73□□□□□ -1.65
HOXA9P31269 CASC19-206ENST00000641028 1430 ntBASIC4.72□□□□□ -1.65
HOXA9P31269 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HOXA9P31269 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HOXA9P31269 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms