Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC239798.3-201ENST00000454459 408 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC133473.1-201ENST00000455173 299 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 RPL5P30-201ENST00000465511 891 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC004453.1-201ENST00000487895 408 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 ATP1B1P1-201ENST00000509767 915 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 AC016180.1-201ENST00000567945 403 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 OR1F2P-201ENST00000570470 933 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 MIR4646-201ENST00000580775 63 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 AL512624.1-201ENST00000613638 469 ntBASIC4.7□□□□□ -1.66
CCDC42Q96M95 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC42Q96M95 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
CCDC42Q96M95 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC42Q96M95 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC42Q96M95 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 MFSD8-242ENST00000641690 4199 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 SNORD66.1-201ENST00000391230 76 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 RNA5SP397-201ENST00000391323 118 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 RN7SKP229-201ENST00000410465 302 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 SNRPFP1-201ENST00000414761 252 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC013470.3-201ENST00000420252 1194 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 CCDC75P1-201ENST00000469247 791 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 RN7SL812P-201ENST00000493791 279 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC025445.1-201ENST00000502728 300 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 PCNPP1-201ENST00000552501 511 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 AP002884.5-201ENST00000595053 1132 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 AL133243.1-201ENST00000614487 366 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC016769.4-201ENST00000616893 535 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 MIR6729-201ENST00000618194 65 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC068870.2-201ENST00000620635 389 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC42Q96M95 AC068254.2-201ENST00000623938 3577 ntBASIC4.69□□□□□ -1.66
CCDC42Q96M95 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
CCDC42Q96M95 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC42Q96M95 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC42Q96M95 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 RNA5SP388-201ENST00000362584 119 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 MIR3065-201ENST00000390137 79 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 AL109941.1-201ENST00000401925 229 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 AL161631.1-201ENST00000417933 486 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AC008072.1-201ENST00000434254 824 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 PTMAP3-201ENST00000447474 330 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 UBA52P3-201ENST00000491303 382 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AP000676.2-201ENST00000529711 301 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AC008638.3-201ENST00000603341 463 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 FP325313.1-201ENST00000638228 703 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC42Q96M95 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC42Q96M95 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC42Q96M95 CR383656.5-201ENST00000547616 1340 ntBASIC4.68□□□□□ -1.66
CCDC42Q96M95 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC42Q96M95 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CCDC42Q96M95 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC42Q96M95 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC42Q96M95 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms