Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC093535.2-201ENST00000624769 2326 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 EIF4A1P3-201ENST00000411521 244 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AL445528.1-201ENST00000426330 420 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 DPY19L1P2-201ENST00000426647 915 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 OR2B7P-201ENST00000429302 934 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 NRBF2P3-201ENST00000432731 865 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AC005912.1-201ENST00000495392 255 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AC008083.2-201ENST00000546707 476 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 MIR1254-2-201ENST00000579553 63 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 PRPF19P1-201ENST00000584766 898 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AC011453.2-201ENST00000603737 729 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AC090948.2-201ENST00000607363 564 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 AL445423.1-201ENST00000609941 536 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 KARSP3-201ENST00000571212 1504 ntBASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
HDDC3Q8N4P3 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC091046.3-201ENST00000631455 1574 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 OR51C1P-202ENST00000641159 1444 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 DDX18P3-201ENST00000404856 2007 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 OR4K15-201ENST00000305051 1216 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 RNU6-146P-201ENST00000384602 108 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 BX510359.2-201ENST00000417920 305 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC073464.3-201ENST00000422564 712 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 RSL24D1P6-201ENST00000426934 401 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC073143.1-201ENST00000436316 395 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 RPL36AP15-201ENST00000444514 266 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 PRPF38AP1-201ENST00000451976 933 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 NIFKP7-201ENST00000503365 834 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC108120.2-201ENST00000512973 294 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 RNA5SP392-201ENST00000516905 112 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 SMARCE1P4-201ENST00000523647 241 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 SOX5P1-201ENST00000524155 1127 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC020910.2-201ENST00000603635 610 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC018695.5-201ENST00000605872 315 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC007497.1-201ENST00000610421 561 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AC074276.2-201ENST00000619891 348 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 CR381572.2-201ENST00000624852 397 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 FRG1EP-201ENST00000634469 770 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 MIR6830-201ENST00000636015 70 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 AL034370.1-201ENST00000397254 1590 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 SMG1P4-204ENST00000523028 4131 ntBASIC4.91□□□□□ -1.62
HDDC3Q8N4P3 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 NCLP2-201ENST00000416078 1462 ntBASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 AC114546.3-201ENST00000623582 1734 ntBASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
HDDC3Q8N4P3 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms