Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 RPSAP65-201ENST00000429660 595 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 YWHAEP5-201ENST00000431545 765 ntBASIC5.49□□□□□ -1.53
MSX2P35548 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 LINC00328-2P-201ENST00000436585 219 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX2P35548 AL121601.2-201ENST00000438019 707 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 AL671855.1-201ENST00000446875 1203 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 RPS27AP2-201ENST00000457576 465 ntBASIC5.49□□□□□ -1.53
MSX2P35548 RN7SL552P-201ENST00000462094 276 ntBASIC5.49□□□□□ -1.53
MSX2P35548 XACT-201ENST00000468762 497 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX2P35548 AC126182.1-201ENST00000478134 357 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC015524.1-201ENST00000491585 472 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.49□□□□□ -1.53
MSX2P35548 PGBD4P4-201ENST00000509673 613 ntBASIC5.49□□□□□ -1.53
MSX2P35548 OR5H7P-201ENST00000514084 930 ntBASIC5.49□□□□□ -1.53
MSX2P35548 FABP5P5-201ENST00000515537 406 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AP001000.1-201ENST00000526843 742 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC137627.1-201ENST00000545761 289 ntBASIC5.49□□□□□ -1.53
MSX2P35548 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.49□□□□□ -1.53
MSX2P35548 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC5.49□□□□□ -1.53
MSX2P35548 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 ATP5F1P7-201ENST00000567330 760 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC024267.2-201ENST00000582737 417 ntBASIC5.49□□□□□ -1.53
MSX2P35548 ELOCP28-201ENST00000590044 317 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX2P35548 LARP7P1-201ENST00000605576 316 ntBASIC5.49□□□□□ -1.53
MSX2P35548 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX2P35548 AC026368.1-201ENST00000614934 690 ntBASIC5.49□□□□□ -1.53
MSX2P35548 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.49□□□□□ -1.53
MSX2P35548 AL356274.1-201ENST00000617064 410 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AP004607.9-201ENST00000618202 316 ntBASIC5.49□□□□□ -1.53
MSX2P35548 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 AC022140.2-201ENST00000623500 188 ntBASIC5.49□□□□□ -1.53
MSX2P35548 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 AC011815.3-201ENST00000624194 473 ntBASIC5.49□□□□□ -1.53
MSX2P35548 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 OR11H2-202ENST00000641517 1085 ntBASIC5.49□□□□□ -1.53
MSX2P35548 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 RLIMP2-201ENST00000427891 1563 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AL034546.1-201ENST00000623740 3693 ntBASIC5.49□□□□□ -1.53
MSX2P35548 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 CASC19-206ENST00000641028 1430 ntBASIC5.48□□□□□ -1.53
MSX2P35548 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX2P35548 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX2P35548 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
MSX2P35548 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 RNA5SP326-201ENST00000363209 110 ntBASIC5.48□□□□□ -1.53
MSX2P35548 U3.23-201ENST00000391132 200 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AL035419.1-201ENST00000397037 564 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AL512430.2-201ENST00000406786 339 ntBASIC5.48□□□□□ -1.53
MSX2P35548 CEACAMP8-201ENST00000413902 580 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX2P35548 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX2P35548 Z99497.1-201ENST00000421282 135 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AC066692.1-201ENST00000421721 457 ntBASIC5.48□□□□□ -1.53
MSX2P35548 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX2P35548 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX2P35548 NANOGP4-201ENST00000427230 913 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC5.48□□□□□ -1.53
MSX2P35548 FO393419.3-201ENST00000428741 282 ntBASIC5.48□□□□□ -1.53
MSX2P35548 KCTD9P1-201ENST00000430462 1167 ntBASIC5.48□□□□□ -1.53
MSX2P35548 MED14P1-201ENST00000430517 648 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX2P35548 AC009263.1-201ENST00000441193 1239 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AL645936.1-201ENST00000441979 518 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AC023141.8-201ENST00000442554 208 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX2P35548 AL590004.3-202ENST00000445883 451 ntBASIC5.48□□□□□ -1.53
MSX2P35548 RPS18P1-201ENST00000447840 458 ntBASIC5.48□□□□□ -1.53
MSX2P35548 RPL31P11-202ENST00000454082 372 ntBASIC5.48□□□□□ -1.53
MSX2P35548 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX2P35548 RNU1-88P-201ENST00000459274 128 ntBASIC5.48□□□□□ -1.53
MSX2P35548 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX2P35548 AC037198.2-201ENST00000478845 733 ntBASIC5.48□□□□□ -1.53
MSX2P35548 RN7SL502P-201ENST00000481857 290 ntBASIC5.48□□□□□ -1.53
MSX2P35548 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX2P35548 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX2P35548 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms