Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU6-356P-201ENST00000384140 107 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 MIR1282-201ENST00000408865 101 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.45□□□□□ -1.38
HMGB1P09429 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.45□□□□□ -1.38
HMGB1P09429 CKS1BP5-201ENST00000434172 273 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.45□□□□□ -1.38
HMGB1P09429 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.45□□□□□ -1.38
HMGB1P09429 AC018635.1-201ENST00000468292 1030 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
HMGB1P09429 C1GALT1P2-201ENST00000510813 1104 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC109471.1-201ENST00000511631 612 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC016065.2-201ENST00000514530 444 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 RNU4ATAC18P-201ENST00000516179 126 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC092709.1-201ENST00000521355 1045 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC6.45□□□□□ -1.38
HMGB1P09429 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC6.45□□□□□ -1.38
HMGB1P09429 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.45□□□□□ -1.38
HMGB1P09429 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC6.45□□□□□ -1.38
HMGB1P09429 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
HMGB1P09429 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC6.45□□□□□ -1.38
HMGB1P09429 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.45□□□□□ -1.38
HMGB1P09429 MIR3908-201ENST00000579798 126 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC6.45□□□□□ -1.38
HMGB1P09429 ELOCP28-201ENST00000590044 317 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AP001542.2-201ENST00000593141 364 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC005255.1-201ENST00000593748 216 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 DNAJC19P3-201ENST00000594491 331 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.45□□□□□ -1.38
HMGB1P09429 VN1R87P-201ENST00000596706 487 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 BNIP3P31-201ENST00000604515 566 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 IMMP1LP1-201ENST00000605170 488 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 IGLCOR22-2-201ENST00000605398 313 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 OR7A19P-201ENST00000608051 733 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC124016.2-201ENST00000610058 665 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AL512427.1-201ENST00000618593 349 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AC006065.5-201ENST00000623427 349 ntBASIC6.45□□□□□ -1.38
HMGB1P09429 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC6.45□□□□□ -1.38
HMGB1P09429 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC6.45□□□□□ -1.38
HMGB1P09429 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.45□□□□□ -1.38
HMGB1P09429 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
HMGB1P09429 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
HMGB1P09429 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
HMGB1P09429 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC6.45□□□□□ -1.38
HMGB1P09429 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.45□□□□□ -1.38
HMGB1P09429 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
HMGB1P09429 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
HMGB1P09429 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC6.44□□□□□ -1.38
HMGB1P09429 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.44□□□□□ -1.38
HMGB1P09429 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.44□□□□□ -1.38
HMGB1P09429 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC6.44□□□□□ -1.38
HMGB1P09429 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 SNORA48.4-201ENST00000391089 134 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC136624.1-201ENST00000400791 413 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 DBIP1-201ENST00000401435 260 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 RN7SKP177-201ENST00000410567 355 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC069218.2-201ENST00000411665 344 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.44□□□□□ -1.38
HMGB1P09429 HYALP1-201ENST00000417674 1279 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC008280.1-201ENST00000418851 412 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC115285.1-201ENST00000424879 736 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC6.44□□□□□ -1.38
HMGB1P09429 RPL36AP39-201ENST00000445859 318 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 RPL7P59-201ENST00000447700 943 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AL645939.1-201ENST00000453429 797 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
HMGB1P09429 RAD51AP1P1-201ENST00000484195 1001 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.44□□□□□ -1.38
HMGB1P09429 RPS24P16-201ENST00000497294 392 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC6.44□□□□□ -1.38
HMGB1P09429 HMGB1P44-201ENST00000508597 572 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.44□□□□□ -1.38
HMGB1P09429 RNA5SP303-201ENST00000516192 130 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC112191.2-201ENST00000522428 333 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 OR10G5P-201ENST00000532733 358 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC6.44□□□□□ -1.38
HMGB1P09429 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.44□□□□□ -1.38
HMGB1P09429 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.44□□□□□ -1.38
HMGB1P09429 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.44□□□□□ -1.38
HMGB1P09429 MIR1273E-201ENST00000581165 102 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 FO393422.1-201ENST00000603908 708 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AL022394.1-201ENST00000606979 292 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC005156.1-201ENST00000613371 573 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC121761.2-201ENST00000617300 689 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC109583.2-201ENST00000617367 129 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 AL138955.1-201ENST00000622881 1040 ntBASIC6.44□□□□□ -1.38
HMGB1P09429 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC6.44□□□□□ -1.38
HMGB1P09429 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.44□□□□□ -1.38
HMGB1P09429 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
HMGB1P09429 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
HMGB1P09429 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.43□□□□□ -1.38
HMGB1P09429 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
HMGB1P09429 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
HMGB1P09429 RNU1-85P-201ENST00000364127 164 ntBASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms