Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC4P09017 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC4P09017 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC4P09017 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC4P09017 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXC4P09017 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXC4P09017 AC233968.1-201ENST00000611212 1300 ntBASIC4.46□□□□□ -1.7
HOXC4P09017 AC026523.2-201ENST00000625039 7739 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HOXC4P09017 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC4P09017 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 AC126323.6-202ENST00000568092 3511 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC4P09017 OR4K17-201ENST00000315543 1032 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 IGKV7-3-201ENST00000357453 298 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC4P09017 AC106901.1-201ENST00000425086 698 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 OR2AH1P-201ENST00000425717 928 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC4P09017 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXC4P09017 TDGF1P1-201ENST00000445734 527 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC4P09017 AC012671.1-201ENST00000451912 203 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 RN7SL385P-201ENST00000468873 276 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AC011276.1-201ENST00000469688 323 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXC4P09017 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXC4P09017 AC093840.1-201ENST00000511599 336 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXC4P09017 AP001804.2-201ENST00000533932 910 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 DYNLL1P4-201ENST00000549314 266 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AL121839.1-201ENST00000556233 1185 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXC4P09017 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXC4P09017 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXC4P09017 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 AL159169.2-201ENST00000610061 1269 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 AC083809.1-201ENST00000615051 472 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 AL121873.1-201ENST00000616013 524 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 LINC00901.1-201ENST00000617252 152 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 LINC01109-201ENST00000603837 3081 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXC4P09017 VN2R3P-201ENST00000422626 1412 ntBASIC4.45□□□□□ -1.7
HOXC4P09017 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXC4P09017 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXC4P09017 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC4P09017 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 AC009951.1-201ENST00000623674 2614 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXC4P09017 AC107021.2-201ENST00000567714 2095 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC4P09017 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXC4P09017 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 OR5P1P-201ENST00000299512 925 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
HOXC4P09017 RNA5SP509-201ENST00000364577 119 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXC4P09017 MIR3065-201ENST00000390137 79 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 AC136624.1-201ENST00000400791 413 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 FCF1P5-201ENST00000406490 482 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 RNU4-25P-201ENST00000410569 230 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 TMSB10P2-201ENST00000416049 131 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 GAPDHP49-201ENST00000421421 961 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 CHIAP3-201ENST00000423668 1133 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXC4P09017 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXC4P09017 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 RPL21P126-201ENST00000470049 478 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXC4P09017 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXC4P09017 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 OR8G5-201ENST00000524943 1041 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXC4P09017 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXC4P09017 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXC4P09017 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXC4P09017 COX6CP4-201ENST00000605798 228 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 OR7M1P-201ENST00000608946 533 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 AC006338.2-201ENST00000616864 791 ntBASIC4.44□□□□□ -1.7
HOXC4P09017 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXC4P09017 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms