Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC008628.2-201ENST00000502605 298 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC106822.1-201ENST00000502647 526 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AP000620.1-201ENST00000527147 504 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AP000593.3-201ENST00000546065 578 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC090826.1-203ENST00000569235 490 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC006115.2-201ENST00000596823 202 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC090578.1-201ENST00000604955 591 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL390208.1-201ENST00000605885 644 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL354760.1-201ENST00000608357 643 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 MIR6721-201ENST00000617181 87 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL512652.1-201ENST00000619006 500 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 FAM27E2-201ENST00000619668 403 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC019278.1-201ENST00000623516 479 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AL157786.1-207ENST00000627771 695 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC087565.3-203ENST00000641018 837 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC119674.1-202ENST00000641333 1860 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC002525.1-201ENST00000624392 1622 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 UGT2B24P-201ENST00000514441 1597 ntBASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC39Q9UFE4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.32
CCDC39Q9UFE4 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RNU6-413P-201ENST00000384115 107 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RNU6-1042P-201ENST00000384204 107 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 Y_RNA.554-201ENST00000384672 102 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RNU4-74P-201ENST00000411280 161 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 NMD3P2-201ENST00000421815 761 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 GAPDHP59-201ENST00000435908 267 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 GTF3AP5-201ENST00000442645 697 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AL121769.1-201ENST00000469473 401 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RPSAP51-201ENST00000497462 645 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 FAM92A1P2-202ENST00000504766 877 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RNU6-506P-201ENST00000516553 94 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 SEPT10P1-201ENST00000517342 1162 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC106038.2-201ENST00000520706 568 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 HIGD1AP18-201ENST00000520730 278 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC126615.2-201ENST00000553003 515 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AL121839.1-201ENST00000556233 1185 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC002519.2-203ENST00000567043 837 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC138207.8-204ENST00000579588 527 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC006539.2-201ENST00000601729 572 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 TEX41-293ENST00000630451 690 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC073869.7-201ENST00000640874 297 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AL022311.1-201ENST00000623726 19416 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RBMY1HP-201ENST00000382759 1389 ntBASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC39Q9UFE4 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms