Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS4XP16-201ENST00000427198 791 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 NPM1P22-201ENST00000427761 952 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC005189.1-201ENST00000431286 310 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 NPM1P33-201ENST00000438918 872 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 FAR2P1-206ENST00000449736 709 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 NPM1P39-201ENST00000449818 867 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 CYCSP42-201ENST00000450823 238 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 RN7SL515P-201ENST00000463999 297 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 COPS8P2-201ENST00000473228 627 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 RPL21P47-201ENST00000483696 477 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC006499.3-201ENST00000506077 748 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 RN7SKP141-201ENST00000516167 338 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC012339.2-201ENST00000523996 453 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 BNIP3P1-201ENST00000547295 580 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 HAUS8P1-201ENST00000549005 542 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL049870.4-201ENST00000555741 486 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC018552.1-201ENST00000562099 811 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 CD24P2-201ENST00000565486 219 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC069307.1-201ENST00000602820 447 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL049844.2-201ENST00000604280 628 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC021851.1-201ENST00000608537 1082 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC245100.7-201ENST00000609678 442 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL121890.2-201ENST00000617644 465 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC078880.5-201ENST00000617845 421 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 MIR6719-201ENST00000622428 87 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC015871.5-202ENST00000623252 701 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 METTL15-211ENST00000634762 718 ntTSL 5 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 TMEM30CP-203ENST00000637814 1035 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 VPS35P1-201ENST00000563400 1518 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AC011493.1-201ENST00000596753 1632 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.34□□□□□ -1.71
NKX3-1Q99801 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
NKX3-1Q99801 AL731566.1-201ENST00000620490 1937 ntBASIC4.34□□□□□ -1.71
NKX3-1Q99801 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC009643.2-201ENST00000603543 1448 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 SNORA67-201ENST00000384423 137 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 MIR105-2-201ENST00000385083 81 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 SNORA77-201ENST00000408716 125 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC016769.2-201ENST00000414815 475 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NKX3-1Q99801 QRSL1P2-201ENST00000418582 964 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 OR51A6P-201ENST00000418680 1004 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 RPL36AP10-201ENST00000421785 322 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 COX6CP13-201ENST00000428703 226 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL627308.1-201ENST00000435693 821 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 HMGB1P26-201ENST00000452520 628 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 RN7SL610P-201ENST00000463845 291 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 RN7SL443P-201ENST00000464331 290 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC009127.1-201ENST00000467090 155 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC021205.1-201ENST00000468797 348 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 RPL7P6-201ENST00000480903 738 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC072052.1-201ENST00000496556 306 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC010374.1-201ENST00000503762 1237 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC010350.1-201ENST00000504908 231 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC024558.1-201ENST00000505008 528 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 BUD31P1-201ENST00000521828 359 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 EIF4A2P5-201ENST00000529914 499 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.33□□□□□ -1.72
NKX3-1Q99801 NDUFB4P11-201ENST00000560510 395 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 CYCSP40-201ENST00000575927 294 ntBASIC4.33□□□□□ -1.72
NKX3-1Q99801 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms