Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FAM27B-201ENST00000610601 213 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC004241.3-201ENST00000611728 517 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC006453.5-201ENST00000636451 619 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC119674.1-220ENST00000641502 1048 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 SMG1P6-201ENST00000532337 2930 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AL450326.2-201ENST00000421913 1962 ntBASIC4.22□□□□□ -1.73
SKA3Q8IX90 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.22□□□□□ -1.73
SKA3Q8IX90 AC108751.5-201ENST00000492880 1336 ntBASIC4.21□□□□□ -1.73
SKA3Q8IX90 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
SKA3Q8IX90 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
SKA3Q8IX90 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.73
SKA3Q8IX90 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
SKA3Q8IX90 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
SKA3Q8IX90 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC008549.2-201ENST00000333482 706 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 RNA5SP191-201ENST00000362585 102 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 SNORA58B-201ENST00000364259 136 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 LINC00993-201ENST00000420453 540 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AL645608.4-201ENST00000423619 154 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC006455.6-201ENST00000426192 893 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 OR2B7P-201ENST00000429302 934 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC063943.1-201ENST00000465434 453 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 RPL5P30-201ENST00000465511 891 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 RN7SL817P-201ENST00000480777 288 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC067904.2-201ENST00000517322 1283 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 BUD31P1-201ENST00000521828 359 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AP001922.4-201ENST00000526967 290 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC012414.2-201ENST00000559474 187 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 MIR3934-201ENST00000579806 107 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AL031320.1-201ENST00000604177 357 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC091979.2-201ENST00000607514 214 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC012467.1-201ENST00000607740 256 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC084036.1-201ENST00000609190 508 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 AC105105.5-201ENST00000622635 1294 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 Z98755.1-201ENST00000407015 1384 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 HSPA8P17-201ENST00000427029 1382 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 NCLP2-201ENST00000416078 1462 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SKA3Q8IX90 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SKA3Q8IX90 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.21□□□□□ -1.74
SKA3Q8IX90 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
SKA3Q8IX90 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
SKA3Q8IX90 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SKA3Q8IX90 RLIMP2-201ENST00000427891 1563 ntBASIC4.2□□□□□ -1.74
SKA3Q8IX90 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SKA3Q8IX90 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.2□□□□□ -1.74
SKA3Q8IX90 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
SKA3Q8IX90 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SKA3Q8IX90 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SKA3Q8IX90 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
SKA3Q8IX90 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC4.2□□□□□ -1.74
SKA3Q8IX90 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
SKA3Q8IX90 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SKA3Q8IX90 GCNT6-201ENST00000379591 934 ntBASIC4.2□□□□□ -1.74
SKA3Q8IX90 MIR550A3-201ENST00000390735 95 ntBASIC4.2□□□□□ -1.74
SKA3Q8IX90 HDGFP1-201ENST00000405943 252 ntBASIC4.2□□□□□ -1.74
SKA3Q8IX90 AL512430.2-201ENST00000406786 339 ntBASIC4.2□□□□□ -1.74
SKA3Q8IX90 AMZ2P2-201ENST00000406819 1057 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms