Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC146944.2-203ENST00000502493 354 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AC139495.1-202ENST00000513164 354 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 IGKV2-23-201ENST00000518729 323 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AP000827.1-201ENST00000527814 258 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 GTF2IP22-201ENST00000554443 182 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 AL121772.2-201ENST00000614331 297 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 MIR6075-201ENST00000620782 95 ntBASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC88AQ3V6T2 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 TET1P1-201ENST00000426627 2301 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AC106871.1-201ENST00000568324 3102 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 Z98745.1-201ENST00000402553 494 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 RPS26P4-201ENST00000431743 355 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 TPT1P1-201ENST00000458495 518 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AC108145.1-201ENST00000503770 153 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 FTH1P21-201ENST00000512179 511 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AC053481.4-201ENST00000583164 216 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 BPIFA4P-203ENST00000603168 689 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AC006065.6-201ENST00000625201 545 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 AP005435.3-201ENST00000531260 3198 ntBASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
CCDC88AQ3V6T2 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 EI24P3-201ENST00000399046 1062 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AL139095.3-201ENST00000419672 1203 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AL117339.2-201ENST00000430475 180 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AL162151.2-201ENST00000448875 158 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 MORF4L2P1-201ENST00000503761 858 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 RNA5SP249-201ENST00000516127 99 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 MIR6891-201ENST00000618788 93 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AL136164.3-201ENST00000624429 3978 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AC105074.1-201ENST00000623380 3095 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AC004656.1-201ENST00000568479 4951 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 RN7SKP235-201ENST00000410662 305 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AL157831.1-201ENST00000426134 473 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 snoU13.24-201ENST00000458998 104 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 RNA5SP103-201ENST00000459503 118 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 SCARNA13-201ENST00000516672 275 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 AC068993.1-201ENST00000546724 589 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 RN7SL339P-201ENST00000580597 296 ntBASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CCDC88AQ3V6T2 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 SNORA74D-201ENST00000516404 141 ntBASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 RNA5SP73-201ENST00000516744 108 ntBASIC5.42□□□□□ -1.54
CCDC88AQ3V6T2 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms