Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 RNU1-6P-201ENST00000516290 144 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 OR5M7P-201ENST00000526140 972 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
CHD3Q12873 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.02□□□□□ -1.77
CHD3Q12873 SNORA74C-1-201ENST00000580726 201 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 MIR3138-201ENST00000585238 82 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 AC006453.5-201ENST00000636451 619 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 CASC19-255ENST00000641733 1385 ntBASIC4.02□□□□□ -1.77
CHD3Q12873 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CHD3Q12873 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHD3Q12873 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.02□□□□□ -1.77
CHD3Q12873 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.01□□□□□ -1.77
CHD3Q12873 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CHD3Q12873 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC135352.1-201ENST00000506173 1418 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 OR6C69P-201ENST00000394268 893 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.01□□□□□ -1.77
CHD3Q12873 RPL36AP10-201ENST00000421785 322 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.01□□□□□ -1.77
CHD3Q12873 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC002553.2-201ENST00000453217 340 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 EIF2S2P5-201ENST00000457635 968 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC108751.2-201ENST00000469993 231 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 AC090686.1-201ENST00000481577 749 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.01□□□□□ -1.77
CHD3Q12873 RNA5SP360-201ENST00000516555 118 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.01□□□□□ -1.77
CHD3Q12873 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC023575.1-201ENST00000580510 358 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 MIR4715-201ENST00000584117 79 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 IMMP1LP1-201ENST00000605170 488 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 AC074140.1-201ENST00000621617 208 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHD3Q12873 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC4.01□□□□□ -1.77
CHD3Q12873 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.01□□□□□ -1.77
CHD3Q12873 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.01□□□□□ -1.77
CHD3Q12873 OR5AQ1P-203ENST00000641818 1529 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 OR51C1P-202ENST00000641159 1444 ntBASIC4.01□□□□□ -1.77
CHD3Q12873 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.01□□□□□ -1.77
CHD3Q12873 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4□□□□□ -1.77
CHD3Q12873 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CHD3Q12873 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC4□□□□□ -1.77
CHD3Q12873 AP001324.1-201ENST00000428553 399 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC112206.1-201ENST00000468416 477 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC010618.1-201ENST00000469924 477 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC020593.1-201ENST00000507399 299 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4□□□□□ -1.77
CHD3Q12873 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4□□□□□ -1.77
CHD3Q12873 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 AL121890.3-201ENST00000618494 516 ntBASIC4□□□□□ -1.77
CHD3Q12873 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4□□□□□ -1.77
CHD3Q12873 AC008758.3-201ENST00000507003 1829 ntBASIC4□□□□□ -1.77
CHD3Q12873 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CHD3Q12873 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4□□□□□ -1.77
CHD3Q12873 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4□□□□□ -1.77
CHD3Q12873 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC4□□□□□ -1.77
CHD3Q12873 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CHD3Q12873 MIR129-1-201ENST00000384972 72 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC233289.1-201ENST00000403700 508 ntBASIC4□□□□□ -1.77
CHD3Q12873 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4□□□□□ -1.77
CHD3Q12873 RPL5P30-201ENST00000465511 891 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4□□□□□ -1.77
CHD3Q12873 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 AC022726.1-201ENST00000587475 207 ntBASIC4□□□□□ -1.77
CHD3Q12873 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4□□□□□ -1.77
CHD3Q12873 AL121932.1-201ENST00000605542 214 ntBASIC4□□□□□ -1.77
CHD3Q12873 OR7M1P-201ENST00000608946 533 ntBASIC4□□□□□ -1.77
CHD3Q12873 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4□□□□□ -1.77
CHD3Q12873 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms