Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 NSRP1P1-201ENST00000444067 1693 ntBASIC6.54□□□□□ -1.36
SOX4Q06945 MAT2B-201ENST00000280969 2226 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.54□□□□□ -1.36
SOX4Q06945 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SOX4Q06945 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
SOX4Q06945 Z93929.1-201ENST00000418200 1475 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 DDX18P6-201ENST00000450119 1997 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SOX4Q06945 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 RPL21P132-201ENST00000331267 462 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SOX4Q06945 Y_RNA.263-201ENST00000364659 114 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RN7SKP269-201ENST00000365545 319 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AL672167.2-201ENST00000377164 879 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 Y_RNA.402-201ENST00000383972 102 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RNU4-31P-201ENST00000384211 141 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
SOX4Q06945 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RNU6-248P-201ENST00000410720 107 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC6.53□□□□□ -1.36
SOX4Q06945 AIMP1P1-201ENST00000418670 937 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RPL12P12-201ENST00000424633 501 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 OFD1P12Y-201ENST00000427963 1207 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 ZYG11AP1-201ENST00000430329 837 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 AL022238.1-201ENST00000442557 355 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC016027.4-201ENST00000450866 277 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 RPS20P24-201ENST00000457473 361 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RBM43P1-201ENST00000476891 1081 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RN7SL165P-201ENST00000477476 291 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AP000797.1-201ENST00000478870 387 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 SETP14-201ENST00000497538 873 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 RNF138P1-201ENST00000502765 546 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 RN7SKP98-201ENST00000517070 156 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 MIR3614-201ENST00000581261 86 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AC008752.3-201ENST00000588113 712 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC011497.2-201ENST00000600255 639 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AC103792.1-201ENST00000603591 919 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AC233280.2-201ENST00000603917 1070 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.53□□□□□ -1.36
SOX4Q06945 AC129778.1-202ENST00000623812 261 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 VPS8-228ENST00000628962 207 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 AL591379.1-207ENST00000635982 261 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 AMYH02020865.1-205ENST00000636189 261 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
SOX4Q06945 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC6.53□□□□□ -1.36
SOX4Q06945 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC6.53□□□□□ -1.36
SOX4Q06945 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.53□□□□□ -1.36
SOX4Q06945 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 AL359091.1-201ENST00000449048 1734 ntBASIC6.53□□□□□ -1.36
SOX4Q06945 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 GOLGB1-202ENST00000393667 11198 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SOX4Q06945 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
SOX4Q06945 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
SOX4Q06945 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms