Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC004069.2-201ENST00000505438 1114 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 RPL23AP53-201ENST00000521854 457 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC2.63□□□□□ -1.99
HSPG2P98160 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HSPG2P98160 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 CASC19-261ENST00000641853 1638 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC2.63□□□□□ -1.99
HSPG2P98160 MFSD8-236ENST00000641509 4050 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 MIR128-1-201ENST00000384921 82 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 AC007066.1-201ENST00000392902 381 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 RN7SKP156-201ENST00000410308 342 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.63□□□□□ -1.99
HSPG2P98160 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 AC138761.5-201ENST00000433967 325 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 FP325313.1-201ENST00000638228 703 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 AC093297.3-201ENST00000607056 2517 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 AL022323.4-201ENST00000623980 13120 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 AC073136.1-201ENST00000449426 2884 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 OR6K3-202ENST00000368146 996 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 KAT6A-203ENST00000406337 9241 ntAPPRIS P3 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC2.63□□□□□ -1.99
HSPG2P98160 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC2.63□□□□□ -1.99
HSPG2P98160 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC2.63□□□□□ -1.99
HSPG2P98160 AC092435.3-201ENST00000565538 3654 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 MIR3945-201ENST00000581853 98 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 PRPF19P1-201ENST00000584766 898 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 AC006065.6-201ENST00000625201 545 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC2.62□□□□□ -1.99
HSPG2P98160 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
HSPG2P98160 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC2.62□□□□□ -1.99
HSPG2P98160 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC2.62□□□□□ -1.99
HSPG2P98160 MTND4LP20-201ENST00000402379 270 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 HSPE1P12-201ENST00000412576 301 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 OR9M1P-201ENST00000459641 921 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 RPS27AP17-201ENST00000463344 455 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 AC111000.6-201ENST00000514471 709 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.62□□□□□ -1.99
HSPG2P98160 AC107294.1-201ENST00000609524 467 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC2.62□□□□□ -1.99
HSPG2P98160 AL360270.2-201ENST00000562952 5985 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 GDA-209ENST00000545168 5362 ntTSL 2 BASIC2.62□□□□□ -1.99
HSPG2P98160 AP003175.1-201ENST00000641383 6658 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC2.62□□□□□ -1.99
HSPG2P98160 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC2.62□□□□□ -1.99
HSPG2P98160 FTH1P9-201ENST00000513251 355 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 MTND1P6-201ENST00000523621 946 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC2.62□□□□□ -1.99
HSPG2P98160 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
HSPG2P98160 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC2.62□□□□□ -1.99
HSPG2P98160 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC2.62□□□□□ -1.99
HSPG2P98160 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC2.62□□□□□ -1.99
HSPG2P98160 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC2.62□□□□□ -1.99
HSPG2P98160 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 RPS20P14-201ENST00000412545 360 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 BX510359.1-201ENST00000456973 237 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 AL136126.1-201ENST00000473603 402 ntBASIC2.62□□□□□ -1.99
HSPG2P98160 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
HSPG2P98160 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC2.62□□□□□ -1.99
HSPG2P98160 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC2.62□□□□□ -1.99
HSPG2P98160 AC244505.7-201ENST00000599675 272 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms