Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 AC096921.1-201ENST00000411661 375 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 Z82198.3-201ENST00000421145 199 ntBASIC5.5□□□□□ -1.53
MSX2P35548 RPL12P12-201ENST00000424633 501 ntBASIC5.5□□□□□ -1.53
MSX2P35548 MGAT2P2-201ENST00000427194 797 ntBASIC5.5□□□□□ -1.53
MSX2P35548 MTCO2P19-201ENST00000427513 598 ntBASIC5.5□□□□□ -1.53
MSX2P35548 CNOT7P1-201ENST00000429006 852 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 RPEP4-201ENST00000437636 602 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC064862.5-201ENST00000440618 334 ntBASIC5.5□□□□□ -1.53
MSX2P35548 RPL12P49-201ENST00000441100 121 ntBASIC5.5□□□□□ -1.53
MSX2P35548 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 USP9YP29-201ENST00000445112 563 ntBASIC5.5□□□□□ -1.53
MSX2P35548 SEPHS1P4-201ENST00000446112 1176 ntBASIC5.5□□□□□ -1.53
MSX2P35548 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 KATNBL1P6-201ENST00000453433 915 ntBASIC5.5□□□□□ -1.53
MSX2P35548 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 AC027673.1-201ENST00000456245 405 ntBASIC5.5□□□□□ -1.53
MSX2P35548 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 NCOR1P1-202ENST00000486162 291 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC5.5□□□□□ -1.53
MSX2P35548 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 AC096751.1-202ENST00000502691 1067 ntBASIC5.5□□□□□ -1.53
MSX2P35548 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 WBP1LP4-201ENST00000505043 344 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC116353.2-201ENST00000505332 712 ntBASIC5.5□□□□□ -1.53
MSX2P35548 MTND2P33-201ENST00000506452 1031 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 RPL37P25-201ENST00000507308 276 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC109464.2-201ENST00000510242 943 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC010587.2-201ENST00000511727 448 ntBASIC5.5□□□□□ -1.53
MSX2P35548 OR5AK3P-201ENST00000527486 1297 ntBASIC5.5□□□□□ -1.53
MSX2P35548 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 AHI1-217ENST00000534469 680 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 AP3S2-214ENST00000560940 519 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC5.5□□□□□ -1.53
MSX2P35548 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 AC019322.1-201ENST00000571869 389 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC5.5□□□□□ -1.53
MSX2P35548 MTND1P15-201ENST00000579262 949 ntBASIC5.5□□□□□ -1.53
MSX2P35548 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC5.5□□□□□ -1.53
MSX2P35548 AP001542.2-201ENST00000593141 364 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC063977.7-201ENST00000594454 337 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AL109618.2-201ENST00000605527 211 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AL390877.1-201ENST00000605704 214 ntBASIC5.5□□□□□ -1.53
MSX2P35548 RPSAP75-201ENST00000605848 301 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC009779.8-202ENST00000607990 932 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AL451074.6-201ENST00000608512 729 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC131235.4-201ENST00000609288 620 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC013476.2-201ENST00000614456 459 ntBASIC5.5□□□□□ -1.53
MSX2P35548 MIR6811-201ENST00000620409 58 ntBASIC5.5□□□□□ -1.53
MSX2P35548 MIR6503-201ENST00000622884 86 ntBASIC5.5□□□□□ -1.53
MSX2P35548 AC068213.1-201ENST00000625124 226 ntBASIC5.5□□□□□ -1.53
MSX2P35548 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 PCMTD1P7-201ENST00000634506 357 ntBASIC5.5□□□□□ -1.53
MSX2P35548 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 AL137141.1-201ENST00000624622 4836 ntBASIC5.5□□□□□ -1.53
MSX2P35548 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSX2P35548 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
MSX2P35548 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.5□□□□□ -1.53
MSX2P35548 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 AC011477.1-204ENST00000623416 1325 ntBASIC5.49□□□□□ -1.53
MSX2P35548 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
MSX2P35548 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX2P35548 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 AL121950.1-201ENST00000624993 2077 ntBASIC5.49□□□□□ -1.53
MSX2P35548 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 OR4N2-201ENST00000315947 924 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
MSX2P35548 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
MSX2P35548 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 RN7SKP69-201ENST00000365390 305 ntBASIC5.49□□□□□ -1.53
MSX2P35548 SNORA75-201ENST00000384158 137 ntBASIC5.49□□□□□ -1.53
MSX2P35548 MIR142-201ENST00000384835 87 ntBASIC5.49□□□□□ -1.53
MSX2P35548 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
MSX2P35548 HMGB3P18-201ENST00000406327 590 ntBASIC5.49□□□□□ -1.53
MSX2P35548 GPS2P1-201ENST00000411761 986 ntBASIC5.49□□□□□ -1.53
MSX2P35548 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX2P35548 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX2P35548 RPS4XP5-201ENST00000419038 768 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms