Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU1-20P-201ENST00000363314 162 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.39□□□□□ -1.55
COL5A3P25940 RN7SKP159-201ENST00000410657 292 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.39□□□□□ -1.55
COL5A3P25940 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.39□□□□□ -1.55
COL5A3P25940 RPL7L1P8-201ENST00000469911 741 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 RPL5P12-201ENST00000477071 851 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.39□□□□□ -1.55
COL5A3P25940 RNA5SP249-201ENST00000516127 99 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 RNU6-352P-201ENST00000516908 107 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.39□□□□□ -1.55
COL5A3P25940 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.39□□□□□ -1.55
COL5A3P25940 AC005520.3-201ENST00000602874 370 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.39□□□□□ -1.55
COL5A3P25940 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.39□□□□□ -1.55
COL5A3P25940 AL356121.2-201ENST00000624715 780 ntBASIC5.39□□□□□ -1.55
COL5A3P25940 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.39□□□□□ -1.55
COL5A3P25940 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL5A3P25940 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL5A3P25940 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
COL5A3P25940 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
COL5A3P25940 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.38□□□□□ -1.55
COL5A3P25940 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.38□□□□□ -1.55
COL5A3P25940 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 EIF4A1P1-201ENST00000420241 934 ntBASIC5.38□□□□□ -1.55
COL5A3P25940 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 AC091564.1-201ENST00000464563 479 ntBASIC5.38□□□□□ -1.55
COL5A3P25940 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.38□□□□□ -1.55
COL5A3P25940 AC026403.1-201ENST00000518938 295 ntBASIC5.38□□□□□ -1.55
COL5A3P25940 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.38□□□□□ -1.55
COL5A3P25940 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.38□□□□□ -1.55
COL5A3P25940 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL5A3P25940 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
COL5A3P25940 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.38□□□□□ -1.55
COL5A3P25940 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC5.38□□□□□ -1.55
COL5A3P25940 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
COL5A3P25940 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.38□□□□□ -1.55
COL5A3P25940 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.38□□□□□ -1.55
COL5A3P25940 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL5A3P25940 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A3P25940 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 RNA5SP119-201ENST00000362715 117 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 RNA5SP187-201ENST00000384400 119 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A3P25940 AL450992.3-201ENST00000413192 568 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 GOT2P5-201ENST00000433995 546 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A3P25940 RPS4XP4-201ENST00000443195 763 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AL500522.2-201ENST00000448562 343 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 VN1R32P-201ENST00000452234 905 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A3P25940 IFITM8P-201ENST00000522529 394 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AC107982.3-201ENST00000584957 985 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.37□□□□□ -1.55
COL5A3P25940 MIR6075-201ENST00000620782 95 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.37□□□□□ -1.55
COL5A3P25940 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
COL5A3P25940 CASC19-261ENST00000641853 1638 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.37□□□□□ -1.55
COL5A3P25940 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A3P25940 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL5A3P25940 OR56B2P-201ENST00000317102 954 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL5A3P25940 RNU1-83P-201ENST00000363426 164 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 RNA5SP175-201ENST00000364275 119 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AC018644.1-201ENST00000429934 551 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A3P25940 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A3P25940 PRSS3P4-201ENST00000453323 162 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A3P25940 AC010460.1-201ENST00000507087 466 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 NPM1P21-201ENST00000513394 762 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A3P25940 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.37□□□□□ -1.55
COL5A3P25940 AL451086.1-201ENST00000605596 223 ntBASIC5.37□□□□□ -1.55
COL5A3P25940 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.37□□□□□ -1.55
COL5A3P25940 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.37□□□□□ -1.55
COL5A3P25940 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
COL5A3P25940 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
COL5A3P25940 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A3P25940 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.36□□□□□ -1.55
COL5A3P25940 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A3P25940 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A3P25940 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A3P25940 U8.11-201ENST00000384699 133 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 U8.12-201ENST00000384701 133 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 PTMAP2-201ENST00000397627 327 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 OR5BE1P-201ENST00000425977 939 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 AL035246.1-201ENST00000433554 1255 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms