Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 AP003168.1-201ENST00000530091 307 ntBASIC5.45□□□□□ -1.54
BDNFP23560 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.45□□□□□ -1.54
BDNFP23560 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.45□□□□□ -1.54
BDNFP23560 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 AC067852.4-201ENST00000590314 478 ntBASIC5.45□□□□□ -1.54
BDNFP23560 ZNF92P2-201ENST00000600543 1059 ntBASIC5.45□□□□□ -1.54
BDNFP23560 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.45□□□□□ -1.54
BDNFP23560 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 AC093799.2-201ENST00000610062 578 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AL162574.1-201ENST00000615702 950 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC5.45□□□□□ -1.54
BDNFP23560 U6.107-201ENST00000637108 79 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AC009452.1-201ENST00000640823 606 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AC024341.1-201ENST00000526444 1552 ntBASIC5.45□□□□□ -1.54
BDNFP23560 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
BDNFP23560 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.44□□□□□ -1.54
BDNFP23560 NSRP1P1-201ENST00000444067 1693 ntBASIC5.44□□□□□ -1.54
BDNFP23560 SCARNA15-201ENST00000607520 4325 ntBASIC5.44□□□□□ -1.54
BDNFP23560 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
BDNFP23560 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC5.44□□□□□ -1.54
BDNFP23560 OR1L6-202ENST00000373684 1044 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AL645733.1-201ENST00000402250 217 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AL078604.1-201ENST00000404609 466 ntBASIC5.44□□□□□ -1.54
BDNFP23560 RNU2-6P-201ENST00000411404 190 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AC092745.2-202ENST00000411880 369 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AC016769.2-201ENST00000414815 475 ntBASIC5.44□□□□□ -1.54
BDNFP23560 GJA6P-201ENST00000415117 1042 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC5.44□□□□□ -1.54
BDNFP23560 AC023128.2-201ENST00000420880 1223 ntBASIC5.44□□□□□ -1.54
BDNFP23560 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.44□□□□□ -1.54
BDNFP23560 HMGN2P25-201ENST00000486956 268 ntBASIC5.44□□□□□ -1.54
BDNFP23560 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC5.44□□□□□ -1.54
BDNFP23560 AC005351.1-201ENST00000511152 786 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.44□□□□□ -1.54
BDNFP23560 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.44□□□□□ -1.54
BDNFP23560 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.44□□□□□ -1.54
BDNFP23560 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 RN7SL290P-201ENST00000578661 300 ntBASIC5.44□□□□□ -1.54
BDNFP23560 MIR4646-201ENST00000580775 63 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.44□□□□□ -1.54
BDNFP23560 EIF1P6-201ENST00000600054 334 ntBASIC5.44□□□□□ -1.54
BDNFP23560 AL162574.2-201ENST00000614618 657 ntBASIC5.44□□□□□ -1.54
BDNFP23560 LINC00901.1-201ENST00000617252 152 ntBASIC5.44□□□□□ -1.54
BDNFP23560 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 MIR6839-201ENST00000620425 113 ntBASIC5.44□□□□□ -1.54
BDNFP23560 MIR6730-201ENST00000622213 67 ntBASIC5.44□□□□□ -1.54
BDNFP23560 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.44□□□□□ -1.54
BDNFP23560 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 AC131971.1-201ENST00000332881 1482 ntBASIC5.44□□□□□ -1.54
BDNFP23560 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 DCAF13P3-201ENST00000561147 1334 ntBASIC5.44□□□□□ -1.54
BDNFP23560 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
BDNFP23560 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.44□□□□□ -1.54
BDNFP23560 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.44□□□□□ -1.54
BDNFP23560 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
BDNFP23560 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 RNU6-1279P-201ENST00000383917 103 ntBASIC5.43□□□□□ -1.54
BDNFP23560 RNA5SP187-201ENST00000384400 119 ntBASIC5.43□□□□□ -1.54
BDNFP23560 RNA5SP241-201ENST00000391326 114 ntBASIC5.43□□□□□ -1.54
BDNFP23560 HMGB3P31-201ENST00000413333 595 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 AL590762.4-201ENST00000425885 253 ntBASIC5.43□□□□□ -1.54
BDNFP23560 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 AC068135.1-201ENST00000446164 246 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 RPL7P61-201ENST00000451721 751 ntBASIC5.43□□□□□ -1.54
BDNFP23560 snoU13.20-201ENST00000459180 104 ntBASIC5.43□□□□□ -1.54
BDNFP23560 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 AC097173.1-201ENST00000505862 819 ntBASIC5.43□□□□□ -1.54
BDNFP23560 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms