Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SHOX2O60902 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.55□□□□□ -1.68
SHOX2O60902 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SHOX2O60902 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SHOX2O60902 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.54□□□□□ -1.68
SHOX2O60902 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 AC093775.1-201ENST00000624154 1868 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC109780.1-201ENST00000451768 1344 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SHOX2O60902 FAM3C2-201ENST00000312214 681 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.54□□□□□ -1.68
SHOX2O60902 SNORA17.1-201ENST00000362945 126 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SHOX2O60902 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SHOX2O60902 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 GTF2IP5-201ENST00000414608 731 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AL807761.1-201ENST00000417622 171 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 RBMY2KP-201ENST00000418221 992 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC092647.1-201ENST00000420654 287 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.54□□□□□ -1.68
SHOX2O60902 GAPDHP49-201ENST00000421421 961 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 OR52B5P-201ENST00000435337 951 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 RPL7P28-201ENST00000437739 740 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 DDX39BP2-208ENST00000453923 258 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC079168.2-201ENST00000453977 416 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 ISCUP1-201ENST00000454451 448 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 RN7SL585P-201ENST00000470538 280 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.54□□□□□ -1.68
SHOX2O60902 AC109458.1-201ENST00000508858 316 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 RN7SKP260-201ENST00000516907 149 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.54□□□□□ -1.68
SHOX2O60902 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.54□□□□□ -1.68
SHOX2O60902 CR383656.6-201ENST00000550518 394 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.54□□□□□ -1.68
SHOX2O60902 AC005034.4-201ENST00000603612 899 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC011453.2-201ENST00000603737 729 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AL627230.1-201ENST00000613077 211 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC131238.1-201ENST00000617135 328 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AC010435.1-201ENST00000623353 1177 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 IPO5-229ENST00000631030 192 ntTSL 5 BASIC4.54□□□□□ -1.68
SHOX2O60902 OR52B5P-202ENST00000641118 1110 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 CASC19-264ENST00000641912 1184 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SHOX2O60902 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SHOX2O60902 AL356317.1-201ENST00000396110 1436 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 AL391684.1-202ENST00000641293 1636 ntBASIC4.54□□□□□ -1.68
SHOX2O60902 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
SHOX2O60902 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
SHOX2O60902 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 RN7SKP224-201ENST00000364140 325 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 RNU6-729P-201ENST00000384399 107 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 RNU1-89P-201ENST00000384592 164 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SHOX2O60902 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.53□□□□□ -1.68
SHOX2O60902 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.53□□□□□ -1.68
SHOX2O60902 RAD23BP1-201ENST00000421404 1227 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 IPMKP1-201ENST00000425988 855 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.53□□□□□ -1.68
SHOX2O60902 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC4.53□□□□□ -1.68
SHOX2O60902 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.53□□□□□ -1.68
SHOX2O60902 RHOT1P3-201ENST00000436571 331 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 PPIAP17-201ENST00000438507 471 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 SPRYD7P1-201ENST00000443861 570 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC4.53□□□□□ -1.68
SHOX2O60902 AC097484.1-201ENST00000471148 389 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.53□□□□□ -1.68
SHOX2O60902 MIR2114-201ENST00000516645 80 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.53□□□□□ -1.68
SHOX2O60902 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.53□□□□□ -1.68
SHOX2O60902 AC015911.5-201ENST00000587076 451 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 AC007497.1-201ENST00000610421 561 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.53□□□□□ -1.68
SHOX2O60902 MIR6837-201ENST00000620884 64 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 AC099494.2-201ENST00000623371 978 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.53□□□□□ -1.68
SHOX2O60902 NXF4-202ENST00000416098 1465 ntBASIC4.53□□□□□ -1.68
SHOX2O60902 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.53□□□□□ -1.68
SHOX2O60902 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
SHOX2O60902 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
SHOX2O60902 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
SHOX2O60902 SAMMSON-226ENST00000642089 1582 ntBASIC4.53□□□□□ -1.69
SHOX2O60902 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.52□□□□□ -1.69
SHOX2O60902 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
SHOX2O60902 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
SHOX2O60902 RNA5SP455-201ENST00000365190 119 ntBASIC4.52□□□□□ -1.69
SHOX2O60902 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.52□□□□□ -1.69
SHOX2O60902 NPM1P4-201ENST00000414095 812 ntBASIC4.52□□□□□ -1.69
SHOX2O60902 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
SHOX2O60902 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms