Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDH12P55289 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDH12P55289 AC083843.2-201ENST00000568248 6253 ntBASIC4.82□□□□□ -1.64
CDH12P55289 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CDH12P55289 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 AL133268.1-201ENST00000405676 1401 ntBASIC4.81□□□□□ -1.64
CDH12P55289 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.81□□□□□ -1.64
CDH12P55289 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.81□□□□□ -1.64
CDH12P55289 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
CDH12P55289 AL121950.1-201ENST00000624993 2077 ntBASIC4.81□□□□□ -1.64
CDH12P55289 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 AC025574.1-201ENST00000554784 1653 ntBASIC4.81□□□□□ -1.64
CDH12P55289 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 METTL21EP-201ENST00000298105 713 ntBASIC4.81□□□□□ -1.64
CDH12P55289 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
CDH12P55289 RNA5SP335-201ENST00000363817 110 ntBASIC4.81□□□□□ -1.64
CDH12P55289 RN7SKP124-201ENST00000364730 341 ntBASIC4.81□□□□□ -1.64
CDH12P55289 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.81□□□□□ -1.64
CDH12P55289 RNU6-185P-201ENST00000384421 107 ntBASIC4.81□□□□□ -1.64
CDH12P55289 MIR105-1-201ENST00000385222 81 ntBASIC4.81□□□□□ -1.64
CDH12P55289 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.81□□□□□ -1.64
CDH12P55289 DNAJC19P6-201ENST00000401853 280 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AL035079.1-201ENST00000405210 287 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AL390316.1-201ENST00000406279 553 ntBASIC4.81□□□□□ -1.64
CDH12P55289 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
CDH12P55289 RN7SKP286-201ENST00000410894 299 ntBASIC4.81□□□□□ -1.64
CDH12P55289 NPM1P40-201ENST00000412758 733 ntBASIC4.81□□□□□ -1.64
CDH12P55289 VTA1P1-201ENST00000414044 866 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.81□□□□□ -1.64
CDH12P55289 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.81□□□□□ -1.64
CDH12P55289 AL161722.2-201ENST00000434731 981 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 ARAFP2-201ENST00000440565 559 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AL161636.2-201ENST00000445179 927 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.81□□□□□ -1.64
CDH12P55289 RPL7P32-201ENST00000457119 744 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC021205.1-201ENST00000468797 348 ntBASIC4.81□□□□□ -1.64
CDH12P55289 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
CDH12P55289 AC100832.1-201ENST00000471945 383 ntBASIC4.81□□□□□ -1.64
CDH12P55289 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.81□□□□□ -1.64
CDH12P55289 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 AC005351.1-201ENST00000511152 786 ntBASIC4.81□□□□□ -1.64
CDH12P55289 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.81□□□□□ -1.64
CDH12P55289 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.81□□□□□ -1.64
CDH12P55289 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 HMGB1P40-201ENST00000525121 540 ntBASIC4.81□□□□□ -1.64
CDH12P55289 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 MRPS36P5-201ENST00000551909 298 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC008814.1-201ENST00000603797 406 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC104695.2-201ENST00000605056 775 ntBASIC4.81□□□□□ -1.64
CDH12P55289 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC4.81□□□□□ -1.64
CDH12P55289 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC4.81□□□□□ -1.64
CDH12P55289 AC011472.4-201ENST00000615848 491 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC231759.1-201ENST00000616455 597 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC010975.3-201ENST00000618727 978 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC021106.3-201ENST00000623925 531 ntBASIC4.81□□□□□ -1.64
CDH12P55289 AC009039.2-201ENST00000624524 529 ntBASIC4.81□□□□□ -1.64
CDH12P55289 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.81□□□□□ -1.64
CDH12P55289 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.81□□□□□ -1.64
CDH12P55289 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CDH12P55289 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
CDH12P55289 PCAT14-202ENST00000627127 3935 ntBASIC4.8□□□□□ -1.64
CDH12P55289 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.8□□□□□ -1.64
CDH12P55289 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.8□□□□□ -1.64
CDH12P55289 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.8□□□□□ -1.64
CDH12P55289 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CDH12P55289 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.8□□□□□ -1.64
CDH12P55289 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.8□□□□□ -1.64
CDH12P55289 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CDH12P55289 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDH12P55289 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDH12P55289 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CDH12P55289 AC019072.1-201ENST00000604535 1551 ntBASIC4.8□□□□□ -1.64
CDH12P55289 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.8□□□□□ -1.64
CDH12P55289 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDH12P55289 RNU6-543P-201ENST00000362576 108 ntBASIC4.8□□□□□ -1.64
CDH12P55289 RNU6-666P-201ENST00000363499 107 ntBASIC4.8□□□□□ -1.64
CDH12P55289 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.8□□□□□ -1.64
CDH12P55289 Y_RNA.578-201ENST00000390903 88 ntBASIC4.8□□□□□ -1.64
CDH12P55289 AL031985.1-201ENST00000392713 418 ntBASIC4.8□□□□□ -1.64
CDH12P55289 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDH12P55289 EI24P3-201ENST00000399046 1062 ntBASIC4.8□□□□□ -1.64
CDH12P55289 MTCO2P31-201ENST00000402702 684 ntBASIC4.8□□□□□ -1.64
CDH12P55289 BTF3P8-201ENST00000414577 526 ntBASIC4.8□□□□□ -1.64
CDH12P55289 RPS24P7-201ENST00000416921 246 ntBASIC4.8□□□□□ -1.64
CDH12P55289 AC013429.2-201ENST00000418798 781 ntBASIC4.8□□□□□ -1.64
CDH12P55289 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms