Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RN7SKP44-201ENST00000363602 316 ntBASIC6.59□□□□□ -1.35
MSX1P28360 Y_RNA.231-201ENST00000364358 102 ntBASIC6.59□□□□□ -1.35
MSX1P28360 RNU6-1106P-201ENST00000390845 107 ntBASIC6.59□□□□□ -1.35
MSX1P28360 RNU1-149P-201ENST00000390870 161 ntBASIC6.59□□□□□ -1.35
MSX1P28360 NPM1P38-201ENST00000403835 865 ntBASIC6.59□□□□□ -1.35
MSX1P28360 BTBD10P2-201ENST00000404779 676 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AL603908.1-201ENST00000406098 201 ntBASIC6.59□□□□□ -1.35
MSX1P28360 RN7SKP108-201ENST00000411367 328 ntBASIC6.59□□□□□ -1.35
MSX1P28360 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 UQCRHP1-204ENST00000424609 274 ntBASIC6.59□□□□□ -1.35
MSX1P28360 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 DUTP6-201ENST00000425573 462 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 CBX3P6-201ENST00000430257 527 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 AL731563.1-201ENST00000442202 214 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 FREM2-AS1-201ENST00000448887 465 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 AC009244.1-201ENST00000450566 258 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 AL135752.1-201ENST00000479477 471 ntBASIC6.59□□□□□ -1.35
MSX1P28360 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 AC233702.1-201ENST00000482905 502 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AC025674.1-201ENST00000507074 324 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 TMEM248P1-201ENST00000510579 951 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 RAB30-209ENST00000532548 644 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 BNIP3P6-201ENST00000549284 499 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AC012464.1-201ENST00000550687 540 ntTSL 4 BASIC6.59□□□□□ -1.35
MSX1P28360 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 AL162632.2-201ENST00000553933 399 ntBASIC6.59□□□□□ -1.35
MSX1P28360 HMGN1P26-201ENST00000558737 303 ntBASIC6.59□□□□□ -1.35
MSX1P28360 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC6.59□□□□□ -1.35
MSX1P28360 MIR3135A-201ENST00000578460 77 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 POLR3GP2-201ENST00000588366 668 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AL669831.4-202ENST00000590817 238 ntBASIC6.59□□□□□ -1.35
MSX1P28360 BX664608.1-201ENST00000610519 487 ntBASIC6.59□□□□□ -1.35
MSX1P28360 RFPL4AP6-201ENST00000616792 846 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AL354950.2-201ENST00000617939 290 ntBASIC6.59□□□□□ -1.35
MSX1P28360 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 AC130360.2-201ENST00000533477 1556 ntBASIC6.59□□□□□ -1.35
MSX1P28360 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 DCP1B-205ENST00000540622 1547 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX1P28360 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
MSX1P28360 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX1P28360 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX1P28360 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC6.59□□□□□ -1.36
MSX1P28360 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
MSX1P28360 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.59□□□□□ -1.36
MSX1P28360 AC093311.1-201ENST00000506586 2021 ntBASIC6.59□□□□□ -1.36
MSX1P28360 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC6.59□□□□□ -1.36
MSX1P28360 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
MSX1P28360 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC6.58□□□□□ -1.36
MSX1P28360 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 ASNSP1-204ENST00000641977 1664 ntBASIC6.58□□□□□ -1.36
MSX1P28360 VEPH1-202ENST00000392832 3044 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 BRAFP1-201ENST00000445336 2703 ntBASIC6.58□□□□□ -1.36
MSX1P28360 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
MSX1P28360 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 AL512353.3-201ENST00000417517 1326 ntBASIC6.58□□□□□ -1.36
MSX1P28360 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC6.58□□□□□ -1.36
MSX1P28360 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 AL117339.4-201ENST00000608335 7063 ntBASIC6.58□□□□□ -1.36
MSX1P28360 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
MSX1P28360 OR10D1P-201ENST00000355343 936 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RN7SKP184-201ENST00000362348 333 ntBASIC6.58□□□□□ -1.36
MSX1P28360 Y_RNA.31-201ENST00000362574 102 ntBASIC6.58□□□□□ -1.36
MSX1P28360 RNU6-251P-201ENST00000363235 104 ntBASIC6.58□□□□□ -1.36
MSX1P28360 Y_RNA.197-201ENST00000364004 102 ntBASIC6.58□□□□□ -1.36
MSX1P28360 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
MSX1P28360 SNORA11.5-201ENST00000408163 128 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms