Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC084824.1-201ENST00000550917 1005 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 RN7SL600P-201ENST00000581811 299 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.54□□□□□ -1.68
HMGA1P17096 AC097505.1-201ENST00000610199 565 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 ZYXP1-201ENST00000617638 118 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 AC007546.1-201ENST00000619452 559 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 MIR8059-201ENST00000620427 81 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC4.54□□□□□ -1.68
HMGA1P17096 FP325313.1-201ENST00000638228 703 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HMGA1P17096 THAP12P5-201ENST00000405864 2275 ntBASIC4.54□□□□□ -1.68
HMGA1P17096 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.54□□□□□ -1.68
HMGA1P17096 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HMGA1P17096 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGA1P17096 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGA1P17096 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 RNU1-14P-201ENST00000362759 152 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 Y_RNA.126-201ENST00000363382 111 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 RNA5SP175-201ENST00000364275 119 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 RNU1-13P-201ENST00000384499 162 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 RN7SKP235-201ENST00000410662 305 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 RPL6P29-201ENST00000414863 865 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGA1P17096 RPL23AP38-201ENST00000423801 469 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGA1P17096 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 COX6CP15-201ENST00000426313 211 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 RPL23AP25-201ENST00000430973 463 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 BTF3P10-201ENST00000433415 495 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGA1P17096 AC114755.5-201ENST00000447760 831 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGA1P17096 VN1R32P-201ENST00000452234 905 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AL591473.1-201ENST00000464297 313 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 RPS4XP18-201ENST00000495480 763 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.53□□□□□ -1.68
HMGA1P17096 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGA1P17096 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.53□□□□□ -1.68
HMGA1P17096 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGA1P17096 BNIP3P5-201ENST00000562290 498 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 RPL23AP97-201ENST00000568955 471 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 OR51C1P-201ENST00000608504 942 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 AC007546.2-201ENST00000623996 360 ntBASIC4.53□□□□□ -1.68
HMGA1P17096 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.53□□□□□ -1.68
HMGA1P17096 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.53□□□□□ -1.68
HMGA1P17096 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
HMGA1P17096 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
HMGA1P17096 NOL8P1-201ENST00000508336 3529 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 AC099654.3-201ENST00000447087 1546 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.52□□□□□ -1.69
HMGA1P17096 AC133552.1-201ENST00000569988 4007 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
HMGA1P17096 AL022722.2-201ENST00000402519 180 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 RNA5SP36-201ENST00000410197 133 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 RN7SKP263-201ENST00000411194 309 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.52□□□□□ -1.69
HMGA1P17096 RPS20P4-201ENST00000461659 355 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 RPS7P7-201ENST00000463499 571 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 RPL7AP28-201ENST00000464513 571 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.52□□□□□ -1.69
HMGA1P17096 AC010374.1-201ENST00000503762 1237 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.52□□□□□ -1.69
HMGA1P17096 RNA5SP519-201ENST00000516480 119 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 TVP23BP1-201ENST00000557500 617 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.52□□□□□ -1.69
HMGA1P17096 AC006116.5-201ENST00000591936 559 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 RPL7P50-201ENST00000600588 727 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 Z98200.1-201ENST00000607298 470 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 FAM27D1-201ENST00000612308 341 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.52□□□□□ -1.69
HMGA1P17096 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
HMGA1P17096 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.52□□□□□ -1.69
HMGA1P17096 AC097461.1-201ENST00000568928 2821 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 AC105074.1-201ENST00000623380 3095 ntBASIC4.52□□□□□ -1.69
HMGA1P17096 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms