Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 PCNAP1-201ENST00000505363 709 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 GSTP1P1-201ENST00000548078 319 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC093524.1-201ENST00000564266 1094 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC027455.1-201ENST00000574104 594 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 SLC25A36P1-201ENST00000590111 465 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AL139022.2-201ENST00000606934 443 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AL355802.4-201ENST00000607635 548 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 FAM25E-202ENST00000608562 189 ntBASIC4.91□□□□□ -1.62
SIX2Q9NPC8 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.91□□□□□ -1.62
SIX2Q9NPC8 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 VN2R3P-201ENST00000422626 1412 ntBASIC4.9□□□□□ -1.62
SIX2Q9NPC8 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 CPHL1P-201ENST00000461341 3407 ntBASIC4.9□□□□□ -1.62
SIX2Q9NPC8 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SIX2Q9NPC8 ZNF137P-201ENST00000456718 1920 ntBASIC4.9□□□□□ -1.62
SIX2Q9NPC8 MIR365B-201ENST00000362317 111 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 RN7SKP199-201ENST00000410325 305 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 CDY14P-201ENST00000431260 1014 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 CDY12P-201ENST00000440679 1015 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 ARL4AP3-201ENST00000441452 574 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 CDY13P-201ENST00000445813 1015 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 CDY23P-201ENST00000451661 1014 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC104849.1-201ENST00000462623 405 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 RPL12P20-201ENST00000475538 479 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 RN7SL826P-201ENST00000479724 288 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 RN7SL346P-201ENST00000491561 294 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC021146.3-201ENST00000511911 260 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 CKS1BP1-201ENST00000555221 240 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC027176.2-201ENST00000559166 746 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC011458.1-201ENST00000604034 617 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AP006248.3-201ENST00000623580 594 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AL136520.1-201ENST00000600311 1322 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 LINC00622-201ENST00000562811 1570 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC105074.1-201ENST00000623380 3095 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 AC005261.6-201ENST00000623072 1387 ntBASIC4.9□□□□□ -1.63
SIX2Q9NPC8 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
SIX2Q9NPC8 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 OR14L1P-202ENST00000641545 3009 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 RN7SKP115-201ENST00000363177 317 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 MIR421-201ENST00000365696 85 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 RNU1-63P-201ENST00000383902 164 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 RNU6-40P-201ENST00000384254 107 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 AL049697.2-201ENST00000403708 294 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 RAB9AP4-201ENST00000415230 609 ntBASIC4.89□□□□□ -1.63
SIX2Q9NPC8 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.89□□□□□ -1.63
SIX2Q9NPC8 AC007394.1-201ENST00000421941 531 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms