Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.41□□□□□ -1.54
ATG4AQ8WYN0 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 Y_RNA.169-201ENST00000363745 96 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 RNU1-77P-201ENST00000390868 162 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 SKINT1L-201ENST00000401057 817 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 U3.32-201ENST00000408116 212 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 MIR1282-201ENST00000408865 101 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 RNA5SP487-201ENST00000410186 122 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL008987.1-201ENST00000415528 237 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 ELOCP9-201ENST00000418624 239 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 HIGD1AP12-201ENST00000427832 281 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 RPL23AP19-201ENST00000436229 369 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 GAPDHP58-201ENST00000438477 1006 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AP000281.1-201ENST00000444036 316 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL035407.2-201ENST00000454090 378 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 EIF4A2P4-201ENST00000458691 1196 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 RPL23AP44-201ENST00000482216 473 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC012123.2-201ENST00000485809 248 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 COX6B1P2-201ENST00000489624 230 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC006427.1-201ENST00000514359 712 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 HMGB1P40-201ENST00000525121 540 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL356057.1-201ENST00000533798 831 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC090695.1-201ENST00000561269 1222 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 SNORD39.2-201ENST00000579995 76 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 PIGPP4-201ENST00000584447 307 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC015726.1-201ENST00000602353 681 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 FO393422.1-201ENST00000603908 708 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC016877.3-201ENST00000606778 504 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AC010245.2-201ENST00000606908 1167 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL445423.1-201ENST00000609941 536 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 TUSC7.1-201ENST00000610969 165 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 LINC01808-202ENST00000641680 1116 ntBASIC5.4□□□□□ -1.54
ATG4AQ8WYN0 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 THAP12P5-201ENST00000405864 2275 ntBASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 MTND4P10-201ENST00000446199 1363 ntBASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 CASC19-248ENST00000641674 1356 ntBASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 AC104454.1-201ENST00000421341 1401 ntBASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
ATG4AQ8WYN0 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 ZNF733P-202ENST00000444809 1573 ntBASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AL731532.2-201ENST00000623542 1953 ntBASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 DPPA2P2-201ENST00000418220 897 ntBASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 MFSD13B-201ENST00000420133 1290 ntBASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 C1DP1-201ENST00000426049 402 ntBASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 RPL7AP61-201ENST00000443410 636 ntBASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC5.39□□□□□ -1.55
ATG4AQ8WYN0 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms