Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 OR5AZ1P-201ENST00000527448 943 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 YWHABP2-201ENST00000540201 713 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 NDUFB4P11-201ENST00000560510 395 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AC008814.1-201ENST00000603797 406 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AC097505.1-201ENST00000610199 565 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AL359513.1-201ENST00000614364 557 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 AP002505.2-201ENST00000623585 696 ntBASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
ZNF540Q8NDQ6 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AL133243.3-201ENST00000617415 3004 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC136624.1-201ENST00000400791 413 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 RN7SKP199-201ENST00000410325 305 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 TMBIM7P-201ENST00000418074 855 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AL445528.1-201ENST00000426330 420 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 FABP7P2-201ENST00000429946 379 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 FAM96AP1-201ENST00000430879 482 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 CEACAMP7-201ENST00000444105 496 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC004980.3-201ENST00000447046 365 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AL445433.1-201ENST00000457507 257 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 RPL7P40-201ENST00000481703 745 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC020890.1-201ENST00000491837 504 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 RNA5SP92-201ENST00000516437 110 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 RN7SKP82-201ENST00000516786 223 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC005868.1-201ENST00000536421 331 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 HMGN2P6-201ENST00000551091 273 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 CYCSP40-201ENST00000575927 294 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AC233280.2-201ENST00000603917 1070 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 SNORD91B-202ENST00000608459 222 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 MIR7155-201ENST00000615925 56 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 MIR6719-201ENST00000622428 87 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 AL356489.2-201ENST00000566968 3528 ntBASIC4.66□□□□□ -1.66
ZNF540Q8NDQ6 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.66
ZNF540Q8NDQ6 RNA5SP183-201ENST00000362452 119 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 RNA5SP507-201ENST00000363603 121 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 RNA5SP234-201ENST00000363916 119 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AL590290.1-201ENST00000405336 380 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC092691.2-201ENST00000461787 803 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 HMGB1P3-201ENST00000502802 616 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC097173.1-201ENST00000505862 819 ntBASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC4.65□□□□□ -1.67
ZNF540Q8NDQ6 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms