Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHD3Q12873 NUDT19P3-201ENST00000404698 555 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CHD3Q12873 AL592293.2-201ENST00000422292 996 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 EIF4HP2-201ENST00000424380 563 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 AC006946.1-201ENST00000429106 328 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.06□□□□□ -1.76
CHD3Q12873 AC114755.5-201ENST00000447760 831 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 SNORA84-201ENST00000459229 133 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.06□□□□□ -1.76
CHD3Q12873 AC104763.1-201ENST00000475274 360 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 PGBD4P4-201ENST00000509673 613 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.06□□□□□ -1.76
CHD3Q12873 RNU2-30P-201ENST00000516209 141 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 OR5M2P-201ENST00000529003 936 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 AC084824.1-201ENST00000550917 1005 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CHD3Q12873 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.06□□□□□ -1.76
CHD3Q12873 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.06□□□□□ -1.76
CHD3Q12873 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.06□□□□□ -1.76
CHD3Q12873 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CHD3Q12873 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHD3Q12873 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.06□□□□□ -1.76
CHD3Q12873 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.06□□□□□ -1.76
CHD3Q12873 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHD3Q12873 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
CHD3Q12873 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CHD3Q12873 RNA5SP447-201ENST00000363749 119 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 SNORD113.2-201ENST00000364166 89 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 RNU1-13P-201ENST00000384499 162 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 ATP5HP3-201ENST00000396994 486 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 RPL23AP1-201ENST00000428990 471 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 BMS1P19-201ENST00000433925 393 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 RPL7L1P1-201ENST00000448259 785 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC007016.1-201ENST00000512110 244 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.05□□□□□ -1.76
CHD3Q12873 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC007497.1-201ENST00000610421 561 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AL049794.2-201ENST00000616301 365 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.05□□□□□ -1.76
CHD3Q12873 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 AL445487.1-201ENST00000415694 1580 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 AC008549.2-201ENST00000333482 706 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC002524.1-201ENST00000411687 547 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.05□□□□□ -1.76
CHD3Q12873 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.05□□□□□ -1.76
CHD3Q12873 AL450023.3-201ENST00000440592 271 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.05□□□□□ -1.76
CHD3Q12873 GTF3AP5-201ENST00000442645 697 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 MTND2P28-201ENST00000457540 1044 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 RN7SL517P-201ENST00000462240 305 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AP002812.1-201ENST00000495378 474 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 RPL23AP53-201ENST00000521854 457 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.05□□□□□ -1.76
CHD3Q12873 AC015912.2-201ENST00000571053 181 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AC069366.1-201ENST00000583159 838 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AC034229.5-201ENST00000624258 185 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 AC008785.1-201ENST00000624475 456 ntBASIC4.05□□□□□ -1.76
CHD3Q12873 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
CHD3Q12873 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CHD3Q12873 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC4.05□□□□□ -1.76
CHD3Q12873 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CHD3Q12873 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.04□□□□□ -1.76
CHD3Q12873 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CHD3Q12873 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CHD3Q12873 AC025750.1-201ENST00000399891 379 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.04□□□□□ -1.76
CHD3Q12873 RPL12P28-201ENST00000430852 489 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 RPL35AP21-201ENST00000437667 333 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 YWHAZP2-201ENST00000440317 728 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 RHEBP2-201ENST00000450289 600 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AC091544.1-201ENST00000484702 348 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 BTG4P1-201ENST00000510421 183 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AP001781.1-201ENST00000530977 207 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AC005868.1-201ENST00000536421 331 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.04□□□□□ -1.76
CHD3Q12873 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.04□□□□□ -1.76
CHD3Q12873 AC011270.1-201ENST00000558606 583 ntBASIC4.04□□□□□ -1.76
CHD3Q12873 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms