Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HMGB3P19-201ENST00000403971 560 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AL355615.1-201ENST00000406187 641 ntBASIC4.33□□□□□ -1.72
CDX1P47902 NPM1P4-201ENST00000414095 812 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC013262.1-201ENST00000426710 252 ntBASIC4.33□□□□□ -1.72
CDX1P47902 FO393414.1-201ENST00000428697 1184 ntBASIC4.33□□□□□ -1.72
CDX1P47902 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.33□□□□□ -1.72
CDX1P47902 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.33□□□□□ -1.72
CDX1P47902 GXYLT1P1-201ENST00000446657 490 ntBASIC4.33□□□□□ -1.72
CDX1P47902 RPL7L1P1-201ENST00000448259 785 ntBASIC4.33□□□□□ -1.72
CDX1P47902 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.33□□□□□ -1.72
CDX1P47902 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 VDAC2P4-201ENST00000452925 711 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.33□□□□□ -1.72
CDX1P47902 AL133445.1-201ENST00000467051 452 ntBASIC4.33□□□□□ -1.72
CDX1P47902 OR2AO1P-201ENST00000476497 403 ntBASIC4.33□□□□□ -1.72
CDX1P47902 RN7SL184P-201ENST00000488308 297 ntBASIC4.33□□□□□ -1.72
CDX1P47902 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.33□□□□□ -1.72
CDX1P47902 TCP11X3P-202ENST00000514289 1254 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC010476.1-201ENST00000519111 851 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC134698.5-201ENST00000519444 336 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 IGHVIII-67-4-201ENST00000524281 296 ntBASIC4.33□□□□□ -1.72
CDX1P47902 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.33□□□□□ -1.72
CDX1P47902 AC006116.7-201ENST00000590141 756 ntBASIC4.33□□□□□ -1.72
CDX1P47902 GMFG-212ENST00000602185 423 ntTSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 AP000864.1-201ENST00000609424 650 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC100847.1-201ENST00000611316 481 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AC123768.4-201ENST00000616244 701 ntBASIC4.33□□□□□ -1.72
CDX1P47902 MIR6837-201ENST00000620884 64 ntBASIC4.33□□□□□ -1.72
CDX1P47902 AP003476.1-201ENST00000623984 516 ntBASIC4.33□□□□□ -1.72
CDX1P47902 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC4.33□□□□□ -1.72
CDX1P47902 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.33□□□□□ -1.72
CDX1P47902 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
CDX1P47902 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CDX1P47902 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.33□□□□□ -1.72
CDX1P47902 LINC01109-201ENST00000603837 3081 ntBASIC4.33□□□□□ -1.72
CDX1P47902 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CDX1P47902 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CDX1P47902 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CDX1P47902 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CDX1P47902 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CDX1P47902 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.33□□□□□ -1.72
CDX1P47902 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CDX1P47902 SCN1A-220ENST00000641603 12506 ntBASIC4.33□□□□□ -1.72
CDX1P47902 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CDX1P47902 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 MAPK10-286ENST00000641208 8747 ntBASIC4.32□□□□□ -1.72
CDX1P47902 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.32□□□□□ -1.72
CDX1P47902 OR14L1P-202ENST00000641545 3009 ntBASIC4.32□□□□□ -1.72
CDX1P47902 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CDX1P47902 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CDX1P47902 GAPDHP24-201ENST00000328713 983 ntBASIC4.32□□□□□ -1.72
CDX1P47902 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CDX1P47902 RN7SKP162-201ENST00000363605 345 ntBASIC4.32□□□□□ -1.72
CDX1P47902 RNU6-468P-201ENST00000384003 109 ntBASIC4.32□□□□□ -1.72
CDX1P47902 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CDX1P47902 RPL22P22-201ENST00000395439 379 ntBASIC4.32□□□□□ -1.72
CDX1P47902 RPL31P52-201ENST00000407532 367 ntBASIC4.32□□□□□ -1.72
CDX1P47902 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.32□□□□□ -1.72
CDX1P47902 RPL12P9-201ENST00000412942 488 ntBASIC4.32□□□□□ -1.72
CDX1P47902 AC004690.1-201ENST00000418216 328 ntBASIC4.32□□□□□ -1.72
CDX1P47902 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.32□□□□□ -1.72
CDX1P47902 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.32□□□□□ -1.72
CDX1P47902 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC4.32□□□□□ -1.72
CDX1P47902 NANOGP9-201ENST00000439890 892 ntBASIC4.32□□□□□ -1.72
CDX1P47902 AC019185.1-201ENST00000442718 389 ntBASIC4.32□□□□□ -1.72
CDX1P47902 HSFY3P-201ENST00000444242 1191 ntBASIC4.32□□□□□ -1.72
CDX1P47902 YWHAQP9-201ENST00000445891 512 ntBASIC4.32□□□□□ -1.72
CDX1P47902 AL596266.1-201ENST00000448132 400 ntBASIC4.32□□□□□ -1.72
CDX1P47902 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 RN7SL214P-201ENST00000487317 265 ntBASIC4.32□□□□□ -1.72
CDX1P47902 RN7SL547P-201ENST00000490793 290 ntBASIC4.32□□□□□ -1.72
CDX1P47902 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC4.32□□□□□ -1.72
CDX1P47902 AC113430.1-201ENST00000506872 718 ntBASIC4.32□□□□□ -1.72
CDX1P47902 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.32□□□□□ -1.72
CDX1P47902 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 RN7SKP99-201ENST00000517028 307 ntBASIC4.32□□□□□ -1.72
CDX1P47902 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 AC010306.1-201ENST00000523223 1117 ntBASIC4.32□□□□□ -1.72
CDX1P47902 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.32□□□□□ -1.72
CDX1P47902 AP003102.1-201ENST00000525638 661 ntBASIC4.32□□□□□ -1.72
CDX1P47902 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.32□□□□□ -1.72
CDX1P47902 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.32□□□□□ -1.72
CDX1P47902 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms