Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC37.05■■■■□ 3.52
SHROOM4Q9ULL8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC37.04■■■■□ 3.52
SHROOM4Q9ULL8 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC37.04■■■■□ 3.52
SHROOM4Q9ULL8 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC37.04■■■■□ 3.52
SHROOM4Q9ULL8 MFAP1P1-201ENST00000442257 1255 ntBASIC37.04■■■■□ 3.52
SHROOM4Q9ULL8 AL359075.1-203ENST00000462729 1002 ntBASIC37.04■■■■□ 3.52
SHROOM4Q9ULL8 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
SHROOM4Q9ULL8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC37.03■■■■□ 3.52
SHROOM4Q9ULL8 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC37.03■■■■□ 3.52
SHROOM4Q9ULL8 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC37.03■■■■□ 3.52
SHROOM4Q9ULL8 FDX1P1-201ENST00000449115 551 ntBASIC37.03■■■■□ 3.52
SHROOM4Q9ULL8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC37.03■■■■□ 3.52
SHROOM4Q9ULL8 AL512408.1-201ENST00000569378 2000 ntBASIC37.03■■■■□ 3.52
SHROOM4Q9ULL8 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 PTK2-216ENST00000519881 863 ntTSL 3 BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 AL136038.3-201ENST00000561909 1096 ntBASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 AC011558.1-201ENST00000623459 338 ntBASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 AC012313.10-201ENST00000623509 926 ntBASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 AC020907.5-201ENST00000624372 1936 ntBASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC37.02■■■■□ 3.52
SHROOM4Q9ULL8 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC37.01■■■■□ 3.52
SHROOM4Q9ULL8 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC37.01■■■■□ 3.51
SHROOM4Q9ULL8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC37.01■■■■□ 3.51
SHROOM4Q9ULL8 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC37.01■■■■□ 3.51
SHROOM4Q9ULL8 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC37.01■■■■□ 3.51
SHROOM4Q9ULL8 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC37.01■■■■□ 3.51
SHROOM4Q9ULL8 AL512604.3-201ENST00000569583 964 ntBASIC37.01■■■■□ 3.51
SHROOM4Q9ULL8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 AC131212.4-201ENST00000623606 975 ntBASIC37■■■■□ 3.51
SHROOM4Q9ULL8 MOK-225ENST00000522867 1883 ntTSL 5 BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
SHROOM4Q9ULL8 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 CYGB-204ENST00000589342 815 ntTSL 3 BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC36.99■■■■□ 3.51
SHROOM4Q9ULL8 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 AL023803.3-201ENST00000615559 522 ntBASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 AL031432.5-201ENST00000641059 760 ntBASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC36.98■■■■□ 3.51
SHROOM4Q9ULL8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 AC092667.1-201ENST00000434301 2586 ntBASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC36.97■■■■□ 3.51
SHROOM4Q9ULL8 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
SHROOM4Q9ULL8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC36.96■■■■□ 3.51
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms