Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX2Q9NPC8 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 AL020996.1-203ENST00000536896 2307 ntBASIC20.9■□□□□ 0.94
SIX2Q9NPC8 AL049812.1-201ENST00000432563 2267 ntBASIC20.9■□□□□ 0.94
SIX2Q9NPC8 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 AP003097.1-201ENST00000530657 1135 ntBASIC20.9■□□□□ 0.94
SIX2Q9NPC8 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX2Q9NPC8 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
SIX2Q9NPC8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 TUBB8P6-201ENST00000436895 1288 ntBASIC20.89■□□□□ 0.93
SIX2Q9NPC8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX2Q9NPC8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
SIX2Q9NPC8 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 AC026366.1-201ENST00000488803 879 ntBASIC20.87■□□□□ 0.93
SIX2Q9NPC8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.87■□□□□ 0.93
SIX2Q9NPC8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms