Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.08■□□□□ 0.32
COL12A1Q99715 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.08■□□□□ 0.32
COL12A1Q99715 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
COL12A1Q99715 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
COL12A1Q99715 AC005229.4-201ENST00000610085 2198 ntBASIC17.08■□□□□ 0.32
COL12A1Q99715 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
COL12A1Q99715 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.08■□□□□ 0.32
COL12A1Q99715 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
COL12A1Q99715 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL12A1Q99715 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COL12A1Q99715 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
COL12A1Q99715 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 BX842568.4-201ENST00000421222 227 ntBASIC17.07■□□□□ 0.32
COL12A1Q99715 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.07■□□□□ 0.32
COL12A1Q99715 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.07■□□□□ 0.32
COL12A1Q99715 KRT8P20-201ENST00000423953 1409 ntBASIC17.07■□□□□ 0.32
COL12A1Q99715 LINC00167-201ENST00000530583 1419 ntBASIC17.07■□□□□ 0.32
COL12A1Q99715 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.07■□□□□ 0.32
COL12A1Q99715 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.07■□□□□ 0.32
COL12A1Q99715 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
COL12A1Q99715 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
COL12A1Q99715 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 MIR940-201ENST00000401276 94 ntBASIC17.07■□□□□ 0.32
COL12A1Q99715 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.07■□□□□ 0.32
COL12A1Q99715 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
COL12A1Q99715 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.07■□□□□ 0.32
COL12A1Q99715 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 NUS1P1-201ENST00000446295 882 ntBASIC17.06■□□□□ 0.32
COL12A1Q99715 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.06■□□□□ 0.32
COL12A1Q99715 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.06■□□□□ 0.32
COL12A1Q99715 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.06■□□□□ 0.32
COL12A1Q99715 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.06■□□□□ 0.32
COL12A1Q99715 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL12A1Q99715 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.05■□□□□ 0.32
COL12A1Q99715 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.05■□□□□ 0.32
COL12A1Q99715 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.05■□□□□ 0.32
COL12A1Q99715 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.05■□□□□ 0.32
COL12A1Q99715 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL12A1Q99715 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL12A1Q99715 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL12A1Q99715 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL12A1Q99715 HLA-G-203ENST00000376818 1127 ntBASIC17.05■□□□□ 0.32
COL12A1Q99715 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
COL12A1Q99715 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
COL12A1Q99715 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.05■□□□□ 0.32
COL12A1Q99715 ECEL1P1-201ENST00000373592 1742 ntBASIC17.05■□□□□ 0.32
COL12A1Q99715 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL12A1Q99715 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.05■□□□□ 0.32
COL12A1Q99715 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL12A1Q99715 AC005104.2-201ENST00000427818 678 ntBASIC17.05■□□□□ 0.32
COL12A1Q99715 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.05■□□□□ 0.32
COL12A1Q99715 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.05■□□□□ 0.32
COL12A1Q99715 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC17.04■□□□□ 0.32
COL12A1Q99715 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.04■□□□□ 0.32
COL12A1Q99715 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
COL12A1Q99715 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
COL12A1Q99715 AL121912.1-201ENST00000603683 238 ntBASIC17.04■□□□□ 0.32
COL12A1Q99715 AL121672.3-201ENST00000608644 468 ntBASIC17.04■□□□□ 0.32
COL12A1Q99715 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL12A1Q99715 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL12A1Q99715 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL12A1Q99715 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms