Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CLDN5-201ENST00000403084 2357 ntBASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC23.14■■□□□ 1.29
SMC1BQ8NDV3 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 CHCHD2P8-201ENST00000429873 447 ntBASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 FOSL1P1-201ENST00000511041 816 ntBASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 AC127496.7-201ENST00000625110 1798 ntBASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
SMC1BQ8NDV3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 GLRB-205ENST00000512619 728 ntTSL 3 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.12■■□□□ 1.29
SMC1BQ8NDV3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 AC018553.1-201ENST00000616682 1458 ntBASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.11■■□□□ 1.29
SMC1BQ8NDV3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 AP000867.3-201ENST00000524675 377 ntBASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 AL355385.1-201ENST00000606123 409 ntBASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SMC1BQ8NDV3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 TSPY12P-201ENST00000421279 868 ntBASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 AC034232.1-201ENST00000506026 1064 ntBASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 KRT18P58-201ENST00000527480 1120 ntBASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC23.09■■□□□ 1.29
SMC1BQ8NDV3 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms