Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.86■□□□□ 0.93
SOX4Q06945 AP005242.2-201ENST00000580065 1175 ntBASIC20.86■□□□□ 0.93
SOX4Q06945 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.86■□□□□ 0.93
SOX4Q06945 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX4Q06945 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX4Q06945 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SOX4Q06945 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
SOX4Q06945 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX4Q06945 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.85■□□□□ 0.93
SOX4Q06945 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX4Q06945 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SOX4Q06945 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SOX4Q06945 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX4Q06945 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SOX4Q06945 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.85■□□□□ 0.93
SOX4Q06945 CRYGFP-201ENST00000418459 633 ntBASIC20.85■□□□□ 0.93
SOX4Q06945 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.85■□□□□ 0.93
SOX4Q06945 NAPSB-206ENST00000562112 1266 ntBASIC20.85■□□□□ 0.93
SOX4Q06945 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.85■□□□□ 0.93
SOX4Q06945 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX4Q06945 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
SOX4Q06945 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX4Q06945 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SOX4Q06945 LINC01568-207ENST00000641790 1380 ntBASIC20.85■□□□□ 0.93
SOX4Q06945 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.84■□□□□ 0.93
SOX4Q06945 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SOX4Q06945 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.84■□□□□ 0.93
SOX4Q06945 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX4Q06945 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX4Q06945 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 KRT8P41-201ENST00000533985 1514 ntBASIC20.83■□□□□ 0.93
SOX4Q06945 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX4Q06945 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX4Q06945 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.83■□□□□ 0.93
SOX4Q06945 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX4Q06945 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX4Q06945 FAM207BP-201ENST00000447172 505 ntBASIC20.83■□□□□ 0.93
SOX4Q06945 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.83■□□□□ 0.93
SOX4Q06945 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.83■□□□□ 0.93
SOX4Q06945 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.83■□□□□ 0.93
SOX4Q06945 SLC25A1P4-201ENST00000567977 778 ntBASIC20.83■□□□□ 0.93
SOX4Q06945 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.83■□□□□ 0.93
SOX4Q06945 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX4Q06945 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX4Q06945 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.83■□□□□ 0.92
SOX4Q06945 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SOX4Q06945 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.83■□□□□ 0.92
SOX4Q06945 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
SOX4Q06945 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SOX4Q06945 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SOX4Q06945 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SOX4Q06945 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX4Q06945 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.82■□□□□ 0.92
SOX4Q06945 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX4Q06945 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX4Q06945 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.82■□□□□ 0.92
SOX4Q06945 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.82■□□□□ 0.92
SOX4Q06945 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
SOX4Q06945 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SOX4Q06945 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.82■□□□□ 0.92
SOX4Q06945 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.82■□□□□ 0.92
SOX4Q06945 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SOX4Q06945 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.81■□□□□ 0.92
SOX4Q06945 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX4Q06945 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SOX4Q06945 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX4Q06945 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SOX4Q06945 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SOX4Q06945 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SOX4Q06945 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SOX4Q06945 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SOX4Q06945 INGX-201ENST00000359239 846 ntBASIC20.81■□□□□ 0.92
SOX4Q06945 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.81■□□□□ 0.92
SOX4Q06945 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms