Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
RAE1P78406 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
RAE1P78406 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RAE1P78406 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.48■□□□□ 0.55
RAE1P78406 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RAE1P78406 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.48■□□□□ 0.55
RAE1P78406 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.48■□□□□ 0.55
RAE1P78406 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.48■□□□□ 0.55
RAE1P78406 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RAE1P78406 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RAE1P78406 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.47■□□□□ 0.55
RAE1P78406 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
RAE1P78406 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.47■□□□□ 0.55
RAE1P78406 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.47■□□□□ 0.55
RAE1P78406 RNA5SP413-201ENST00000516373 109 ntBASIC18.47■□□□□ 0.55
RAE1P78406 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.47■□□□□ 0.55
RAE1P78406 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.47■□□□□ 0.55
RAE1P78406 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.47■□□□□ 0.55
RAE1P78406 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.47■□□□□ 0.55
RAE1P78406 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RAE1P78406 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.47■□□□□ 0.55
RAE1P78406 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.47■□□□□ 0.55
RAE1P78406 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.47■□□□□ 0.55
RAE1P78406 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RAE1P78406 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.47■□□□□ 0.55
RAE1P78406 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.46■□□□□ 0.55
RAE1P78406 AC141586.3-201ENST00000562166 1838 ntBASIC18.46■□□□□ 0.55
RAE1P78406 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
RAE1P78406 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.46■□□□□ 0.55
RAE1P78406 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
RAE1P78406 TUBB8P6-201ENST00000436895 1288 ntBASIC18.46■□□□□ 0.55
RAE1P78406 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.46■□□□□ 0.55
RAE1P78406 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.46■□□□□ 0.55
RAE1P78406 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.46■□□□□ 0.55
RAE1P78406 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.46■□□□□ 0.55
RAE1P78406 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.46■□□□□ 0.55
RAE1P78406 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RAE1P78406 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
RAE1P78406 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.45■□□□□ 0.54
RAE1P78406 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
RAE1P78406 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.45■□□□□ 0.54
RAE1P78406 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.45■□□□□ 0.54
RAE1P78406 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.45■□□□□ 0.54
RAE1P78406 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.45■□□□□ 0.54
RAE1P78406 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.45■□□□□ 0.54
RAE1P78406 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
RAE1P78406 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 AL161938.1-201ENST00000569833 2180 ntBASIC18.45■□□□□ 0.54
RAE1P78406 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RAE1P78406 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
RAE1P78406 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 AL020996.1-203ENST00000536896 2307 ntBASIC18.44■□□□□ 0.54
RAE1P78406 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
RAE1P78406 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RAE1P78406 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.44■□□□□ 0.54
RAE1P78406 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.44■□□□□ 0.54
RAE1P78406 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.44■□□□□ 0.54
RAE1P78406 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.44■□□□□ 0.54
RAE1P78406 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.44■□□□□ 0.54
RAE1P78406 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
RAE1P78406 AP003097.1-201ENST00000530657 1135 ntBASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms