Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL8A1P27658 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL8A1P27658 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.02■□□□□ 0.32
COL8A1P27658 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.02■□□□□ 0.32
COL8A1P27658 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.02■□□□□ 0.32
COL8A1P27658 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.02■□□□□ 0.32
COL8A1P27658 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.02■□□□□ 0.32
COL8A1P27658 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.02■□□□□ 0.32
COL8A1P27658 AL353719.1-201ENST00000566847 864 ntBASIC17.02■□□□□ 0.32
COL8A1P27658 AL512604.3-201ENST00000569583 964 ntBASIC17.02■□□□□ 0.32
COL8A1P27658 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.02■□□□□ 0.32
COL8A1P27658 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.02■□□□□ 0.32
COL8A1P27658 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL8A1P27658 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
COL8A1P27658 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
COL8A1P27658 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL8A1P27658 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.31
COL8A1P27658 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL8A1P27658 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.02■□□□□ 0.31
COL8A1P27658 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.01■□□□□ 0.31
COL8A1P27658 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
COL8A1P27658 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.01■□□□□ 0.31
COL8A1P27658 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.01■□□□□ 0.31
COL8A1P27658 TUBB8P6-201ENST00000436895 1288 ntBASIC17.01■□□□□ 0.31
COL8A1P27658 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.01■□□□□ 0.31
COL8A1P27658 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.01■□□□□ 0.31
COL8A1P27658 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.01■□□□□ 0.31
COL8A1P27658 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
COL8A1P27658 HYMAI.1-201ENST00000620949 238 ntBASIC17.01■□□□□ 0.31
COL8A1P27658 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COL8A1P27658 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COL8A1P27658 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
COL8A1P27658 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.01■□□□□ 0.31
COL8A1P27658 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COL8A1P27658 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17■□□□□ 0.31
COL8A1P27658 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17■□□□□ 0.31
COL8A1P27658 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17■□□□□ 0.31
COL8A1P27658 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COL8A1P27658 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17■□□□□ 0.31
COL8A1P27658 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17■□□□□ 0.31
COL8A1P27658 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17■□□□□ 0.31
COL8A1P27658 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC17■□□□□ 0.31
COL8A1P27658 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17■□□□□ 0.31
COL8A1P27658 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
COL8A1P27658 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.99■□□□□ 0.31
COL8A1P27658 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL8A1P27658 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.99■□□□□ 0.31
COL8A1P27658 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
COL8A1P27658 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.99■□□□□ 0.31
COL8A1P27658 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 FAAHP1-202ENST00000446499 1238 ntBASIC16.99■□□□□ 0.31
COL8A1P27658 EMBP1-201ENST00000458200 901 ntBASIC16.99■□□□□ 0.31
COL8A1P27658 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 AC079776.4-201ENST00000511039 504 ntBASIC16.99■□□□□ 0.31
COL8A1P27658 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.99■□□□□ 0.31
COL8A1P27658 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.99■□□□□ 0.31
COL8A1P27658 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.99■□□□□ 0.31
COL8A1P27658 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.99■□□□□ 0.31
COL8A1P27658 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
COL8A1P27658 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL8A1P27658 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC16.99■□□□□ 0.31
COL8A1P27658 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
COL8A1P27658 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms