Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
COL9A1P20849 KRT8P17-201ENST00000453110 1448 ntBASIC20.08■□□□□ 0.8
COL9A1P20849 AC005229.4-201ENST00000610085 2198 ntBASIC20.08■□□□□ 0.8
COL9A1P20849 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL9A1P20849 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL9A1P20849 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
COL9A1P20849 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 AC007663.1-201ENST00000438948 1240 ntBASIC20.07■□□□□ 0.8
COL9A1P20849 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.07■□□□□ 0.8
COL9A1P20849 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.07■□□□□ 0.8
COL9A1P20849 AL512604.3-201ENST00000569583 964 ntBASIC20.07■□□□□ 0.8
COL9A1P20849 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
COL9A1P20849 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.07■□□□□ 0.8
COL9A1P20849 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.07■□□□□ 0.8
COL9A1P20849 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
COL9A1P20849 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.07■□□□□ 0.8
COL9A1P20849 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
COL9A1P20849 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
COL9A1P20849 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL9A1P20849 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.06■□□□□ 0.8
COL9A1P20849 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
COL9A1P20849 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.06■□□□□ 0.8
COL9A1P20849 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.06■□□□□ 0.8
COL9A1P20849 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
COL9A1P20849 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.06■□□□□ 0.8
COL9A1P20849 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
COL9A1P20849 TSPY19P-201ENST00000418461 509 ntBASIC20.06■□□□□ 0.8
COL9A1P20849 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.06■□□□□ 0.8
COL9A1P20849 TSPY18P-201ENST00000441642 509 ntBASIC20.06■□□□□ 0.8
COL9A1P20849 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.06■□□□□ 0.8
COL9A1P20849 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.06■□□□□ 0.8
COL9A1P20849 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.06■□□□□ 0.8
COL9A1P20849 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
COL9A1P20849 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL9A1P20849 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL9A1P20849 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
COL9A1P20849 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
COL9A1P20849 LINC01311-201ENST00000565162 1445 ntBASIC20.05■□□□□ 0.8
COL9A1P20849 WBP2-203ENST00000433525 928 ntTSL 2 BASIC20.05■□□□□ 0.8
COL9A1P20849 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.05■□□□□ 0.8
COL9A1P20849 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC20.05■□□□□ 0.8
COL9A1P20849 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL9A1P20849 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.05■□□□□ 0.8
COL9A1P20849 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL9A1P20849 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.05■□□□□ 0.8
COL9A1P20849 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL9A1P20849 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.05■□□□□ 0.8
COL9A1P20849 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
COL9A1P20849 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 DPP3P2-201ENST00000416030 1696 ntBASIC20.04■□□□□ 0.8
COL9A1P20849 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.04■□□□□ 0.8
COL9A1P20849 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
COL9A1P20849 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.04■□□□□ 0.8
COL9A1P20849 POLD2P1-201ENST00000511220 997 ntBASIC20.04■□□□□ 0.8
COL9A1P20849 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 AC091304.2-201ENST00000564639 760 ntBASIC20.04■□□□□ 0.8
COL9A1P20849 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.04■□□□□ 0.8
COL9A1P20849 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
COL9A1P20849 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
COL9A1P20849 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
COL9A1P20849 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
COL9A1P20849 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.04■□□□□ 0.8
COL9A1P20849 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
COL9A1P20849 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.03■□□□□ 0.8
COL9A1P20849 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.03■□□□□ 0.8
COL9A1P20849 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL9A1P20849 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.03■□□□□ 0.8
COL9A1P20849 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms