Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.37■□□□□ 0.69
MSH3P20585 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
MSH3P20585 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.37■□□□□ 0.69
MSH3P20585 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.37■□□□□ 0.69
MSH3P20585 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
MSH3P20585 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.37■□□□□ 0.69
MSH3P20585 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.37■□□□□ 0.69
MSH3P20585 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.37■□□□□ 0.69
MSH3P20585 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.37■□□□□ 0.69
MSH3P20585 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
MSH3P20585 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.37■□□□□ 0.69
MSH3P20585 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.37■□□□□ 0.69
MSH3P20585 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.37■□□□□ 0.69
MSH3P20585 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH3P20585 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.36■□□□□ 0.69
MSH3P20585 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
MSH3P20585 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.36■□□□□ 0.69
MSH3P20585 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.36■□□□□ 0.69
MSH3P20585 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
MSH3P20585 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.36■□□□□ 0.69
MSH3P20585 KRT16P5-201ENST00000455284 522 ntBASIC19.36■□□□□ 0.69
MSH3P20585 KRT18P16-201ENST00000510337 1294 ntBASIC19.36■□□□□ 0.69
MSH3P20585 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
MSH3P20585 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH3P20585 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.36■□□□□ 0.69
MSH3P20585 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.36■□□□□ 0.69
MSH3P20585 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH3P20585 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
MSH3P20585 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
MSH3P20585 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
MSH3P20585 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
MSH3P20585 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.36■□□□□ 0.69
MSH3P20585 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
MSH3P20585 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MSH3P20585 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH3P20585 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MSH3P20585 AC125437.2-201ENST00000625180 2167 ntBASIC19.35■□□□□ 0.69
MSH3P20585 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
MSH3P20585 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
MSH3P20585 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.35■□□□□ 0.69
MSH3P20585 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.35■□□□□ 0.69
MSH3P20585 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.35■□□□□ 0.69
MSH3P20585 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.35■□□□□ 0.69
MSH3P20585 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH3P20585 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.35■□□□□ 0.69
MSH3P20585 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH3P20585 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.35■□□□□ 0.69
MSH3P20585 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
MSH3P20585 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH3P20585 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSH3P20585 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MSH3P20585 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.35■□□□□ 0.69
MSH3P20585 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.34■□□□□ 0.69
MSH3P20585 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MSH3P20585 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
MSH3P20585 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSH3P20585 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.34■□□□□ 0.69
MSH3P20585 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
MSH3P20585 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.34■□□□□ 0.69
MSH3P20585 UBE2SP1-201ENST00000450587 669 ntBASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms