Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.55■□□□□ 0.24
SDCBPO00560 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.55■□□□□ 0.24
SDCBPO00560 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC16.55■□□□□ 0.24
SDCBPO00560 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SDCBPO00560 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SDCBPO00560 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 KRT16P6-202ENST00000425692 1426 ntBASIC16.54■□□□□ 0.24
SDCBPO00560 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SDCBPO00560 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SDCBPO00560 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.54■□□□□ 0.24
SDCBPO00560 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.54■□□□□ 0.24
SDCBPO00560 AC093787.1-201ENST00000450396 207 ntBASIC16.54■□□□□ 0.24
SDCBPO00560 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.54■□□□□ 0.24
SDCBPO00560 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SDCBPO00560 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.54■□□□□ 0.24
SDCBPO00560 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.54■□□□□ 0.24
SDCBPO00560 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SDCBPO00560 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SDCBPO00560 AC090340.1-201ENST00000620778 4980 ntBASIC16.54■□□□□ 0.24
SDCBPO00560 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SDCBPO00560 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.54■□□□□ 0.24
SDCBPO00560 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SDCBPO00560 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SDCBPO00560 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.53■□□□□ 0.24
SDCBPO00560 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.53■□□□□ 0.24
SDCBPO00560 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.53■□□□□ 0.24
SDCBPO00560 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SDCBPO00560 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 AL512625.2-201ENST00000417533 625 ntBASIC16.53■□□□□ 0.24
SDCBPO00560 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC16.53■□□□□ 0.24
SDCBPO00560 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
SDCBPO00560 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC16.53■□□□□ 0.24
SDCBPO00560 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SDCBPO00560 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.53■□□□□ 0.24
SDCBPO00560 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SDCBPO00560 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SDCBPO00560 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
SDCBPO00560 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
SDCBPO00560 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 CDCA4P2-201ENST00000441182 718 ntBASIC16.52■□□□□ 0.24
SDCBPO00560 AC026185.1-201ENST00000445748 174 ntBASIC16.52■□□□□ 0.24
SDCBPO00560 HES2-205ENST00000487437 968 ntTSL 3 BASIC16.52■□□□□ 0.24
SDCBPO00560 DLX3-202ENST00000512495 834 ntTSL 2 BASIC16.52■□□□□ 0.24
SDCBPO00560 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.52■□□□□ 0.24
SDCBPO00560 VPS53-216ENST00000574029 585 ntTSL 4 BASIC16.52■□□□□ 0.24
SDCBPO00560 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.52■□□□□ 0.24
SDCBPO00560 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SDCBPO00560 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SDCBPO00560 AC007613.1-201ENST00000572811 2597 ntBASIC16.52■□□□□ 0.23
SDCBPO00560 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
SDCBPO00560 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
SDCBPO00560 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.52■□□□□ 0.23
SDCBPO00560 AP001271.2-201ENST00000624018 1556 ntBASIC16.51■□□□□ 0.23
SDCBPO00560 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
SDCBPO00560 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
SDCBPO00560 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SDCBPO00560 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
SDCBPO00560 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms