Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 AC244107.1-201ENST00000442033 332 ntBASIC15.16■□□□□ 0.02
COL6A5A8TX70 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 AC138894.3-201ENST00000603787 634 ntBASIC15.16■□□□□ 0.02
COL6A5A8TX70 AL390719.2-201ENST00000606993 987 ntBASIC15.16■□□□□ 0.02
COL6A5A8TX70 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 TUBB8P6-201ENST00000436895 1288 ntBASIC15.16■□□□□ 0.02
COL6A5A8TX70 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
COL6A5A8TX70 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL6A5A8TX70 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 HLA-J-202ENST00000469281 1241 ntBASIC15.15■□□□□ 0.02
COL6A5A8TX70 AC093525.10-201ENST00000625130 1569 ntBASIC15.15■□□□□ 0.02
COL6A5A8TX70 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 STAC-204ENST00000457375 1366 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 AC010327.4-202ENST00000591484 748 ntBASIC15.15■□□□□ 0.02
COL6A5A8TX70 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL6A5A8TX70 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15.15■□□□□ 0.02
COL6A5A8TX70 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 FAM197Y8-203ENST00000450145 560 ntBASIC15.14■□□□□ 0.01
COL6A5A8TX70 HLA-J-203ENST00000494367 1087 ntBASIC15.14■□□□□ 0.01
COL6A5A8TX70 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 MIR662-201ENST00000384847 95 ntBASIC15.14■□□□□ 0.01
COL6A5A8TX70 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 AC004967.1-201ENST00000453589 447 ntBASIC15.14■□□□□ 0.01
COL6A5A8TX70 AF238378.1-201ENST00000526806 358 ntBASIC15.14■□□□□ 0.01
COL6A5A8TX70 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.14■□□□□ 0.01
COL6A5A8TX70 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL6A5A8TX70 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 KRT8P26-201ENST00000534154 1276 ntBASIC15.13■□□□□ 0.01
COL6A5A8TX70 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL6A5A8TX70 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.13■□□□□ 0.01
COL6A5A8TX70 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms