Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 Y_RNA.719-201ENST00000517156 106 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 AL049830.4-201ENST00000555149 351 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AL049839.1-201ENST00000556151 657 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 SNORA74C-1-201ENST00000580726 201 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 AC007497.1-201ENST00000610421 561 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 SNX18P1Y-201ENST00000616231 511 ntBASIC4.27□□□□□ -1.73
SKA3Q8IX90 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.27□□□□□ -1.73
SKA3Q8IX90 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SKA3Q8IX90 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC131971.1-201ENST00000332881 1482 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SKA3Q8IX90 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SKA3Q8IX90 SNORA74A-201ENST00000364089 198 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 RNU6-729P-201ENST00000384399 107 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 MT-RNR1-201ENST00000389680 954 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AL109941.1-201ENST00000401925 229 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AL645733.1-201ENST00000402250 217 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 RPS12P5-201ENST00000423449 371 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 SLC25A18P1-201ENST00000449385 454 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 CCRL1P1-201ENST00000449542 1053 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC234781.3-201ENST00000452540 973 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 RPL7P16-201ENST00000479738 738 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC093270.2-201ENST00000486157 792 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 RPL32P9-201ENST00000487963 407 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC020890.1-201ENST00000491837 504 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 ENPP7P9-201ENST00000514456 627 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 RNA5SP249-201ENST00000516127 99 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC026616.1-201ENST00000523157 525 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC021006.3-201ENST00000530771 192 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 FAM106CP-201ENST00000582212 507 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC011453.2-201ENST00000603737 729 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 HMGB1P51-201ENST00000605166 638 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AL021707.7-201ENST00000607991 416 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 RMST_5.1-201ENST00000618704 126 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AL023881.1-201ENST00000621088 301 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC020763.5-201ENST00000623298 430 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AP003499.2-201ENST00000624100 483 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC104820.1-201ENST00000624183 307 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 CASC19-222ENST00000641321 1173 ntBASIC4.26□□□□□ -1.73
SKA3Q8IX90 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SKA3Q8IX90 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.26□□□□□ -1.73
SKA3Q8IX90 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 OR5T3-201ENST00000303059 1023 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
SKA3Q8IX90 DDX18P3-201ENST00000404856 2007 ntBASIC4.25□□□□□ -1.73
SKA3Q8IX90 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.25□□□□□ -1.73
SKA3Q8IX90 COX6B1P1-201ENST00000415962 213 ntBASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms