Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 RNA5SP234-201ENST00000363916 119 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 RNU5A-2P-201ENST00000384337 116 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 SNORD56.6-201ENST00000384569 71 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 MIR320B1-201ENST00000390209 79 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 RPL35AP24-201ENST00000413846 330 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 HIGD1AP12-201ENST00000427832 281 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 NPM1P18-201ENST00000434232 732 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC019185.1-201ENST00000442718 389 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 PTENP1-201ENST00000447117 1215 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 RPL7P40-201ENST00000481703 745 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC111193.1-201ENST00000504097 155 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC091912.1-201ENST00000511351 248 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 BX510359.5-201ENST00000515651 304 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 Y_RNA.688-201ENST00000516565 95 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 RNU5A-4P-201ENST00000516588 111 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 DUXAP6-201ENST00000553858 601 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 SETP1-201ENST00000556014 845 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC023813.2-201ENST00000564321 469 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC015720.2-201ENST00000567709 334 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AP005403.1-201ENST00000579720 229 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC015688.2-201ENST00000584523 262 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 ZNF92P3-201ENST00000596594 954 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC012616.1-201ENST00000600294 197 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC124856.1-201ENST00000600819 896 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 SDR42E1P1-201ENST00000611327 477 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 MIR8080-201ENST00000622224 89 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 MIR1322-201ENST00000638013 71 ntBASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD3Q3KNS1 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD3Q3KNS1 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD3Q3KNS1 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
PTCHD3Q3KNS1 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.34□□□□□ -1.56
PTCHD3Q3KNS1 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD3Q3KNS1 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.34□□□□□ -1.56
PTCHD3Q3KNS1 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 OR9K1P-201ENST00000326513 941 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RNA5SP319-201ENST00000362768 119 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ERHP2-201ENST00000402323 299 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RNU2-22P-201ENST00000411266 212 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC092745.2-202ENST00000411880 369 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AL445213.1-201ENST00000412589 747 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC027644.1-201ENST00000419595 298 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC009784.1-201ENST00000426484 460 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ARAFP2-201ENST00000440565 559 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC092473.1-201ENST00000441098 221 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 ARL5AP2-201ENST00000444698 533 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 EXTL2P1-201ENST00000446218 416 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RN7SL51P-201ENST00000468230 285 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 PRDX3P4-201ENST00000470828 747 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 AC037198.2-201ENST00000478845 733 ntBASIC5.33□□□□□ -1.56
PTCHD3Q3KNS1 RPL23AP37-201ENST00000479658 549 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms