Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AK3P4-201ENST00000504283 583 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 HMGB3P16-201ENST00000508037 287 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
CHD3Q12873 AC114781.5-201ENST00000615297 108 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 AP000843.1-201ENST00000624880 701 ntBASIC4.09□□□□□ -1.76
CHD3Q12873 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.09□□□□□ -1.76
CHD3Q12873 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CHD3Q12873 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CHD3Q12873 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
CHD3Q12873 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CHD3Q12873 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.08□□□□□ -1.76
CHD3Q12873 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
CHD3Q12873 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.08□□□□□ -1.76
CHD3Q12873 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.08□□□□□ -1.76
CHD3Q12873 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.08□□□□□ -1.76
CHD3Q12873 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 AL021331.1-201ENST00000402817 582 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 AL445189.1-201ENST00000405722 338 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.08□□□□□ -1.76
CHD3Q12873 GLUD1P9-201ENST00000420997 1173 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 AC006065.1-201ENST00000422539 802 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 RPL12P34-201ENST00000424532 479 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 AL589765.3-201ENST00000446084 462 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 AC004980.3-201ENST00000447046 365 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.08□□□□□ -1.76
CHD3Q12873 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.08□□□□□ -1.76
CHD3Q12873 AC026688.1-201ENST00000520639 1168 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 MED28P5-201ENST00000528254 438 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.08□□□□□ -1.76
CHD3Q12873 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC4.08□□□□□ -1.76
CHD3Q12873 AC024941.1-201ENST00000612250 334 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 DLEU1_1.1-201ENST00000618107 190 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 AC004232.3-201ENST00000622977 525 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CHD3Q12873 AC027228.2-201ENST00000567141 2154 ntBASIC4.08□□□□□ -1.76
CHD3Q12873 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.08□□□□□ -1.76
CHD3Q12873 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHD3Q12873 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.07□□□□□ -1.76
CHD3Q12873 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 IGKV7-3-201ENST00000357453 298 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AL050305.1-201ENST00000399993 1230 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 Z97832.1-201ENST00000402490 328 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 RN7SKP247-201ENST00000411094 308 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 EIF2S2P2-201ENST00000447161 982 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 BTF3P6-201ENST00000448054 499 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AC091167.1-201ENST00000492017 396 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.07□□□□□ -1.76
CHD3Q12873 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.07□□□□□ -1.76
CHD3Q12873 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 AL356218.2-201ENST00000605264 187 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 LINC00901.1-201ENST00000617252 152 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AC007382.1-201ENST00000624376 2618 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AC099654.2-201ENST00000433031 1980 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 RNU1-64P-201ENST00000365443 163 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 RN7SKP267-201ENST00000410381 285 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 RPS17P8-201ENST00000434525 335 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AL451139.1-201ENST00000434718 346 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AC016831.4-201ENST00000438302 307 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 TDGF1P1-201ENST00000445734 527 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 RN7SL244P-201ENST00000493405 297 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.07□□□□□ -1.76
CHD3Q12873 AC002044.3-201ENST00000623314 541 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AL121950.1-201ENST00000624993 2077 ntBASIC4.07□□□□□ -1.76
CHD3Q12873 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CHD3Q12873 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHD3Q12873 SMG1P6-201ENST00000532337 2930 ntBASIC4.06□□□□□ -1.76
CHD3Q12873 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
CHD3Q12873 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
CHD3Q12873 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
CHD3Q12873 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms