Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CDY23P-201ENST00000451661 1014 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AC079804.1-201ENST00000461922 436 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AC026348.1-201ENST00000462549 1053 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 NDUFA5P5-201ENST00000468361 342 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 RWDD4P1-201ENST00000488019 565 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA3P55318 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC3.4□□□□□ -1.87
FOXA3P55318 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC3.4□□□□□ -1.87
FOXA3P55318 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA3P55318 AL049779.2-201ENST00000553847 315 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 OR11J2P-201ENST00000555298 907 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC3.4□□□□□ -1.87
FOXA3P55318 ADAD1P2-201ENST00000588476 646 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA3P55318 AC011453.2-201ENST00000603737 729 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA3P55318 MIR6837-201ENST00000620884 64 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.4□□□□□ -1.87
FOXA3P55318 ZNF962P-201ENST00000443465 3140 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.87
FOXA3P55318 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.4□□□□□ -1.87
FOXA3P55318 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC3.4□□□□□ -1.87
FOXA3P55318 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA3P55318 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
FOXA3P55318 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
FOXA3P55318 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
FOXA3P55318 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXA3P55318 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
FOXA3P55318 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 AL603766.1-201ENST00000407763 664 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 RPL31-204ENST00000409038 817 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA3P55318 RNU2-50P-201ENST00000410494 143 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 SNORA74C-2-201ENST00000411179 201 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 RN7SKP293-201ENST00000411389 296 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 SLC25A18P1-201ENST00000449385 454 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC084754.1-201ENST00000463466 464 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 RPL23AP2-201ENST00000471227 466 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC093270.2-201ENST00000486157 792 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 RPS26P15-201ENST00000488067 348 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 AK6-203ENST00000502819 743 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC139783.2-201ENST00000504847 1145 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 AC098799.3-201ENST00000506095 438 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 PHBP17-201ENST00000528576 541 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC024405.1-201ENST00000532521 1042 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 UBTFL9-201ENST00000534504 1148 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA3P55318 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA3P55318 AC090515.3-201ENST00000560431 315 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 RPL23AP97-201ENST00000568955 471 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.39□□□□□ -1.87
FOXA3P55318 AL139286.1-201ENST00000604465 483 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 AC067838.1-201ENST00000606064 577 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 MIR432-201ENST00000606207 94 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 AL121873.1-201ENST00000616013 524 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
FOXA3P55318 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 LINC02471-203ENST00000641941 4752 ntBASIC3.39□□□□□ -1.87
FOXA3P55318 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
FOXA3P55318 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.39□□□□□ -1.87
FOXA3P55318 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.39□□□□□ -1.87
FOXA3P55318 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.39□□□□□ -1.87
FOXA3P55318 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
FOXA3P55318 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA3P55318 AC099654.2-201ENST00000433031 1980 ntBASIC3.38□□□□□ -1.87
FOXA3P55318 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA3P55318 IQCB2P-201ENST00000401788 1633 ntBASIC3.38□□□□□ -1.87
FOXA3P55318 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA3P55318 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA3P55318 SNURFL-201ENST00000309296 343 ntBASIC3.38□□□□□ -1.87
FOXA3P55318 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
FOXA3P55318 AC104297.1-201ENST00000393779 870 ntBASIC3.38□□□□□ -1.87
FOXA3P55318 RNU6ATAC21P-201ENST00000408656 126 ntBASIC3.38□□□□□ -1.87
FOXA3P55318 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA3P55318 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.38□□□□□ -1.87
FOXA3P55318 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXA3P55318 AL138899.2-201ENST00000439139 499 ntBASIC3.38□□□□□ -1.87
FOXA3P55318 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.38□□□□□ -1.87
FOXA3P55318 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms