Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.57□□□□□ -1.68
SHMT2P34897 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SHMT2P34897 TCP11X3P-202ENST00000514289 1254 ntBASIC4.57□□□□□ -1.68
SHMT2P34897 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.57□□□□□ -1.68
SHMT2P34897 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
SHMT2P34897 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.57□□□□□ -1.68
SHMT2P34897 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SHMT2P34897 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.57□□□□□ -1.68
SHMT2P34897 AC087477.6-201ENST00000559595 843 ntBASIC4.57□□□□□ -1.68
SHMT2P34897 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.57□□□□□ -1.68
SHMT2P34897 AC073137.1-201ENST00000605636 634 ntBASIC4.57□□□□□ -1.68
SHMT2P34897 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.57□□□□□ -1.68
SHMT2P34897 AC234782.5-201ENST00000617723 324 ntBASIC4.57□□□□□ -1.68
SHMT2P34897 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.57□□□□□ -1.68
SHMT2P34897 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.57□□□□□ -1.68
SHMT2P34897 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.57□□□□□ -1.68
SHMT2P34897 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
SHMT2P34897 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SHMT2P34897 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SHMT2P34897 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.57□□□□□ -1.68
SHMT2P34897 AC245100.2-201ENST00000454544 1679 ntBASIC4.57□□□□□ -1.68
SHMT2P34897 AL445487.1-201ENST00000415694 1580 ntBASIC4.57□□□□□ -1.68
SHMT2P34897 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.56□□□□□ -1.68
SHMT2P34897 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SHMT2P34897 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.56□□□□□ -1.68
SHMT2P34897 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SHMT2P34897 SNORA71.2-201ENST00000364941 134 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SHMT2P34897 MIR195-201ENST00000385194 87 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.56□□□□□ -1.68
SHMT2P34897 SNRPFP2-201ENST00000440710 251 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AC073264.2-201ENST00000448886 166 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.56□□□□□ -1.68
SHMT2P34897 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.56□□□□□ -1.68
SHMT2P34897 AC005008.1-201ENST00000456151 612 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 IGLV2-34-201ENST00000490007 283 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.56□□□□□ -1.68
SHMT2P34897 HMGB1P19-201ENST00000517578 577 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.56□□□□□ -1.68
SHMT2P34897 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.56□□□□□ -1.68
SHMT2P34897 FKBP1BP1-201ENST00000553366 325 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.56□□□□□ -1.68
SHMT2P34897 RN7SL690P-201ENST00000582087 240 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.56□□□□□ -1.68
SHMT2P34897 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.56□□□□□ -1.68
SHMT2P34897 AC104785.1-201ENST00000603220 588 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AC026979.4-201ENST00000606555 645 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 AC015804.1-201ENST00000622935 435 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SHMT2P34897 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SHMT2P34897 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SHMT2P34897 AC104118.1-201ENST00000607625 1589 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.56□□□□□ -1.68
SHMT2P34897 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.56□□□□□ -1.68
SHMT2P34897 AC006971.1-201ENST00000407916 4486 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.56□□□□□ -1.68
SHMT2P34897 AC012618.3-205ENST00000637896 1496 ntBASIC4.56□□□□□ -1.68
SHMT2P34897 AC010928.1-201ENST00000592477 1447 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SHMT2P34897 RPS16P5-201ENST00000406501 404 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.55□□□□□ -1.68
SHMT2P34897 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC4.55□□□□□ -1.68
SHMT2P34897 ATG4AP1-201ENST00000416893 538 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 CYCSP10-201ENST00000417973 294 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 AC019050.1-201ENST00000418508 492 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 SOS1-IT1-201ENST00000420644 539 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 AC097523.2-201ENST00000435551 652 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.55□□□□□ -1.68
SHMT2P34897 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC4.55□□□□□ -1.68
SHMT2P34897 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.55□□□□□ -1.68
SHMT2P34897 EIF2S2P5-201ENST00000457635 968 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 AC010326.1-201ENST00000462726 602 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC4.55□□□□□ -1.68
SHMT2P34897 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.55□□□□□ -1.68
SHMT2P34897 AP006289.1-201ENST00000538089 277 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 GSTP1P1-201ENST00000548078 319 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.55□□□□□ -1.68
SHMT2P34897 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC4.55□□□□□ -1.68
SHMT2P34897 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SHMT2P34897 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.55□□□□□ -1.68
SHMT2P34897 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms