Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A1P20908 SPRR2C-201ENST00000290702 219 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 RAB9AP4-201ENST00000415230 609 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 RPL21P91-201ENST00000429231 479 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 RPS26P4-201ENST00000431743 355 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.35□□□□□ -1.71
COL5A1P20908 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 AC010476.1-201ENST00000519111 851 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AP003730.1-201ENST00000524605 285 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.35□□□□□ -1.71
COL5A1P20908 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.35□□□□□ -1.71
COL5A1P20908 FKBP1BP1-201ENST00000553366 325 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 AC025884.1-201ENST00000556034 378 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 RPL7P50-201ENST00000600588 727 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A1P20908 MIR6891-201ENST00000618788 93 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AC091953.5-201ENST00000622919 233 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.35□□□□□ -1.71
COL5A1P20908 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.35□□□□□ -1.71
COL5A1P20908 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A1P20908 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.35□□□□□ -1.71
COL5A1P20908 AL158163.1-201ENST00000603915 1649 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.35□□□□□ -1.71
COL5A1P20908 AL583835.1-201ENST00000399570 407 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AMZ2P2-201ENST00000406819 1057 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.35□□□□□ -1.71
COL5A1P20908 NPM1P26-201ENST00000426339 738 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AL691449.1-201ENST00000426570 421 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 SETP4-201ENST00000455717 868 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 TPT1P3-201ENST00000492841 512 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 NPM1P41-201ENST00000512920 831 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 AP001804.2-201ENST00000533932 910 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.35□□□□□ -1.71
COL5A1P20908 PSMB7P1-201ENST00000556349 514 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC4.35□□□□□ -1.71
COL5A1P20908 RN7SL703P-201ENST00000578485 302 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.35□□□□□ -1.71
COL5A1P20908 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL5A1P20908 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.34□□□□□ -1.71
COL5A1P20908 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.71
COL5A1P20908 AL731532.2-201ENST00000623542 1953 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.34□□□□□ -1.71
COL5A1P20908 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
COL5A1P20908 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
COL5A1P20908 LARP1BP1-201ENST00000506036 1359 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
COL5A1P20908 SNORA63.1-201ENST00000362493 131 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 U3.23-201ENST00000391132 200 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 OR8G2P-201ENST00000412796 908 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
COL5A1P20908 RPL21P43-201ENST00000425440 472 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.34□□□□□ -1.71
COL5A1P20908 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.34□□□□□ -1.71
COL5A1P20908 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.34□□□□□ -1.71
COL5A1P20908 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.34□□□□□ -1.71
COL5A1P20908 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.34□□□□□ -1.71
COL5A1P20908 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.34□□□□□ -1.71
COL5A1P20908 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL5A1P20908 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.34□□□□□ -1.71
COL5A1P20908 AC005899.7-201ENST00000618199 588 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 AC018628.1-201ENST00000624147 3819 ntBASIC4.34□□□□□ -1.71
COL5A1P20908 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.34□□□□□ -1.71
COL5A1P20908 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL5A1P20908 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.72
COL5A1P20908 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.34□□□□□ -1.72
COL5A1P20908 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.34□□□□□ -1.72
COL5A1P20908 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC4.34□□□□□ -1.72
COL5A1P20908 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 AL022393.1-201ENST00000625142 1677 ntBASIC4.33□□□□□ -1.72
COL5A1P20908 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
COL5A1P20908 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL5A1P20908 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL5A1P20908 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms