Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPL23AP61-201ENST00000623642 466 ntBASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
CCDC3Q9BQI4 AC104623.2-202ENST00000623477 4002 ntBASIC4.84□□□□□ -1.64
CCDC3Q9BQI4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC3Q9BQI4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC3Q9BQI4 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC3Q9BQI4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.84□□□□□ -1.64
CCDC3Q9BQI4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 MTCO1P15-201ENST00000529569 1526 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC007342.7-201ENST00000624610 2337 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC079741.1-201ENST00000321498 212 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 RNU4-7P-201ENST00000364758 141 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 SNORA70.10-201ENST00000384515 134 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AL034403.1-201ENST00000399414 885 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 RPL21P67-201ENST00000402896 478 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 MTCYBP7-201ENST00000419540 1134 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC093414.1-201ENST00000434712 514 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 RPL21P133-201ENST00000443666 476 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 CALM1P2-201ENST00000452941 448 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 SUMO1P1-201ENST00000497904 306 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC016559.2-201ENST00000510759 359 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 IGKV1-32-201ENST00000519290 311 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 NDUFB4P11-201ENST00000560510 395 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC009852.2-201ENST00000567898 485 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC020910.3-201ENST00000603701 874 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC135178.6-201ENST00000605314 398 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC006249.1-201ENST00000621223 471 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC074140.1-201ENST00000621617 208 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC007382.1-201ENST00000624376 2618 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 TTC39DP-201ENST00000416781 1688 ntBASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC3Q9BQI4 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 MFSD8-216ENST00000641147 4009 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC009501.3-201ENST00000605001 1352 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-609P-201ENST00000365459 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-1320P-201ENST00000390838 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-1269P-201ENST00000391139 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC004074.1-201ENST00000421810 1063 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 MTND2P21-201ENST00000436242 1042 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AL513321.1-201ENST00000441175 761 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-599P-201ENST00000459383 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RNU6-1193P-201ENST00000459461 107 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 RN7SL354P-201ENST00000469282 294 ntBASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 SSR3-206ENST00000476217 807 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC3Q9BQI4 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms