Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC008752.3-201ENST00000588113 712 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC024085.1-201ENST00000604299 432 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL353621.2-201ENST00000605340 133 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL390208.1-201ENST00000605885 644 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC009994.1-201ENST00000606889 253 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC239809.3-203ENST00000611286 1050 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AL020991.1-201ENST00000612314 373 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC116447.1-201ENST00000613153 453 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC245407.2-201ENST00000614199 451 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 Six3os1_1.1-201ENST00000620900 87 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC103564.3-201ENST00000621194 220 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 CYP3A51P-201ENST00000633513 256 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC243725.1-201ENST00000637164 436 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 AC127070.3-201ENST00000503695 3263 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RASGRP3-203ENST00000407811 4210 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 TATDN2P3-201ENST00000452855 3665 ntBASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC5.35□□□□□ -1.55
CCDC140Q96MF4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RALYL-204ENST00000518566 2682 ntAPPRIS ALT2 TSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL512329.1-201ENST00000404600 1592 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 KIAA0391-203ENST00000534898 2611 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC017104.4-201ENST00000636283 1592 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MTCO1P7-201ENST00000419523 1542 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 GMFG-201ENST00000253054 616 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNA5SP394-201ENST00000364216 119 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNU6-534P-201ENST00000364877 106 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNA5SP302-201ENST00000364896 100 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNU6-282P-201ENST00000365357 103 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNU6-877P-201ENST00000383868 107 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNU6-1103P-201ENST00000384150 107 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNA5SP35-201ENST00000391257 129 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL024474.1-201ENST00000404655 591 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RN7SKP268-201ENST00000411107 316 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MICG-208ENST00000416822 132 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC073136.2-201ENST00000417282 849 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL592293.2-201ENST00000422292 996 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL138479.1-201ENST00000426913 484 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC009362.1-201ENST00000427253 406 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC133104.1-201ENST00000429100 218 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC009518.3-201ENST00000438972 253 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MTND1P12-201ENST00000455231 147 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 snoU13.7-201ENST00000459220 104 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RN7SL143P-201ENST00000496780 297 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 STMN1P2-201ENST00000508435 439 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RPL7L1P7-201ENST00000509986 724 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC139491.5-201ENST00000510029 920 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC011352.2-201ENST00000514574 1016 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RNU6-358P-201ENST00000516564 75 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 SNORA20.3-201ENST00000516880 132 ntBASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms